miRNA: 3'- gGGCCGCaa---GaGCCGUG--GCCAaUGCG- -5'
miRNA: 3'- -GGGCCGCaaGAgCCGUGGCCaau-GCG- -5'
miRNA: 3'- -GgGCCGCAAGAGCCG-----UG-GCCaa-UGCG- -5'
Results 61 - 63 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1592 | 3' | -56.7 | NC_001347.2 | + | 1732 | 0.72 | 0.71275 |
|
Target: 5'- gCCGGCGgugggC-CGGCACgaCGGUgGCGCu -3' miRNA: 3'- gGGCCGCaa---GaGCCGUG--GCCAaUGCG- -5' |
|||||||
| 1592 | 3' | -56.7 | NC_001347.2 | + | 1495 | 0.74 | 0.596815 |
|
Target: 5'- aCCUGGCG--CUgGGCGCCGGguucCGCg -3' miRNA: 3'- -GGGCCGCaaGAgCCGUGGCCaau-GCG- -5' |
|||||||
| 1592 | 3' | -56.7 | NC_001347.2 | + | 1210 | 0.68 | 0.916261 |
|
Target: 5'- gCgCGGCGUUUUUGGCcaacaGCaCGGgccGCGCc -3' miRNA: 3'- -GgGCCGCAAGAGCCG-----UG-GCCaa-UGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home