miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1592 5' -49.4 NC_001347.2 + 40101 0.66 0.999841
Target:  5'- gGGCGaGGgacGACGGcccUGGGGACcgCGGg -3'
miRNA:   3'- aCCGCaUUaa-CUGCC---ACUCUUGa-GCC- -5'
1592 5' -49.4 NC_001347.2 + 136064 0.66 0.999841
Target:  5'- aUGGUGcuccagGGCGGUGGGAcggGCccgCGGa -3'
miRNA:   3'- -ACCGCauuaa-CUGCCACUCU---UGa--GCC- -5'
1592 5' -49.4 NC_001347.2 + 198086 0.67 0.999501
Target:  5'- cGGCGgucgcGACGGUGAcGGucccGCUCGu -3'
miRNA:   3'- aCCGCauuaaCUGCCACU-CU----UGAGCc -5'
1592 5' -49.4 NC_001347.2 + 171772 0.67 0.999501
Target:  5'- cGGCGUccgAAUgGugGGUaGAGAGCgcgcUGGa -3'
miRNA:   3'- aCCGCA---UUAaCugCCA-CUCUUGa---GCC- -5'
1592 5' -49.4 NC_001347.2 + 78362 0.67 0.999491
Target:  5'- cGGCGUGGUggGACccggcggcgccguGGUGGGAggACccgCGGg -3'
miRNA:   3'- aCCGCAUUAa-CUG-------------CCACUCU--UGa--GCC- -5'
1592 5' -49.4 NC_001347.2 + 132921 0.67 0.999397
Target:  5'- gGGCGgacgggcaaacGAUGGUGAGAGgUCGc -3'
miRNA:   3'- aCCGCauuaa------CUGCCACUCUUgAGCc -5'
1592 5' -49.4 NC_001347.2 + 140642 0.67 0.999245
Target:  5'- cGGuCGUGGUggugggGGUGGUGGGGAUUcCGGg -3'
miRNA:   3'- aCC-GCAUUAa-----CUGCCACUCUUGA-GCC- -5'
1592 5' -49.4 NC_001347.2 + 152997 0.67 0.999245
Target:  5'- aUGGCGUcGgaGGCGGUGGGcagGAUgCGGu -3'
miRNA:   3'- -ACCGCAuUaaCUGCCACUC---UUGaGCC- -5'
1592 5' -49.4 NC_001347.2 + 5545 0.67 0.999149
Target:  5'- aGGCGUGcucguaucccggcaaGUUGcGCGGUGGGGGCg--- -3'
miRNA:   3'- aCCGCAU---------------UAAC-UGCCACUCUUGagcc -5'
1592 5' -49.4 NC_001347.2 + 212 0.67 0.999079
Target:  5'- gUGGCGggGUgugucGGCGGUGugcgcGGcCUCGGg -3'
miRNA:   3'- -ACCGCauUAa----CUGCCACu----CUuGAGCC- -5'
1592 5' -49.4 NC_001347.2 + 229691 0.67 0.999079
Target:  5'- gUGGCGggGUgugucGGCGGUGugcgcGGcCUCGGg -3'
miRNA:   3'- -ACCGCauUAa----CUGCCACu----CUuGAGCC- -5'
1592 5' -49.4 NC_001347.2 + 225551 0.68 0.998883
Target:  5'- cGGCGcucg-GACGGaugggGAGAACggCGGu -3'
miRNA:   3'- aCCGCauuaaCUGCCa----CUCUUGa-GCC- -5'
1592 5' -49.4 NC_001347.2 + 135879 0.68 0.998861
Target:  5'- gGaGCGggg-UGGgGGUGGGAagcccccGCUCGGg -3'
miRNA:   3'- aC-CGCauuaACUgCCACUCU-------UGAGCC- -5'
1592 5' -49.4 NC_001347.2 + 142568 0.68 0.998381
Target:  5'- cUGGCGgcGUcGGCGGgagcagcGGGGGCggCGGg -3'
miRNA:   3'- -ACCGCauUAaCUGCCa------CUCUUGa-GCC- -5'
1592 5' -49.4 NC_001347.2 + 165413 0.68 0.998292
Target:  5'- cGGCGcgcgccaacgAGUUGACGGUGAcgaguacguaggugGGACgCGGu -3'
miRNA:   3'- aCCGCa---------UUAACUGCCACU--------------CUUGaGCC- -5'
1592 5' -49.4 NC_001347.2 + 55522 0.68 0.998067
Target:  5'- aGGCGUGu---ACGGUGGGAGgUCu- -3'
miRNA:   3'- aCCGCAUuaacUGCCACUCUUgAGcc -5'
1592 5' -49.4 NC_001347.2 + 209979 0.68 0.998067
Target:  5'- uUGGCGUAGUUGACGGaGucccgcaccGC-CGGg -3'
miRNA:   3'- -ACCGCAUUAACUGCCaCucu------UGaGCC- -5'
1592 5' -49.4 NC_001347.2 + 63066 0.69 0.997282
Target:  5'- gUGGCGgagGAcugccGGCgGGUGuGGGCUCGGc -3'
miRNA:   3'- -ACCGCa--UUaa---CUG-CCACuCUUGAGCC- -5'
1592 5' -49.4 NC_001347.2 + 160568 0.69 0.996248
Target:  5'- cGG-GUAuuugagGACGGUGuAGAuguACUCGGg -3'
miRNA:   3'- aCCgCAUuaa---CUGCCAC-UCU---UGAGCC- -5'
1592 5' -49.4 NC_001347.2 + 199238 0.69 0.995622
Target:  5'- cGuGCGUGAUUauccGACGcGUGAGAucgcGCUCGc -3'
miRNA:   3'- aC-CGCAUUAA----CUGC-CACUCU----UGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.