Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 212 | 0.67 | 0.999079 |
Target: 5'- gUGGCGggGUgugucGGCGGUGugcgcGGcCUCGGg -3' miRNA: 3'- -ACCGCauUAa----CUGCCACu----CUuGAGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 5545 | 0.67 | 0.999149 |
Target: 5'- aGGCGUGcucguaucccggcaaGUUGcGCGGUGGGGGCg--- -3' miRNA: 3'- aCCGCAU---------------UAAC-UGCCACUCUUGagcc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 32460 | 0.69 | 0.994912 |
Target: 5'- -uGCGUAAUUGACGGUGGaAACa--- -3' miRNA: 3'- acCGCAUUAACUGCCACUcUUGagcc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 40101 | 0.66 | 0.999841 |
Target: 5'- gGGCGaGGgacGACGGcccUGGGGACcgCGGg -3' miRNA: 3'- aCCGCaUUaa-CUGCC---ACUCUUGa-GCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 40648 | 0.71 | 0.983477 |
Target: 5'- gGGUGUGcggGACGGUGuuGGGGC-CGGg -3' miRNA: 3'- aCCGCAUuaaCUGCCAC--UCUUGaGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 55522 | 0.68 | 0.998067 |
Target: 5'- aGGCGUGu---ACGGUGGGAGgUCu- -3' miRNA: 3'- aCCGCAUuaacUGCCACUCUUgAGcc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 63066 | 0.69 | 0.997282 |
Target: 5'- gUGGCGgagGAcugccGGCgGGUGuGGGCUCGGc -3' miRNA: 3'- -ACCGCa--UUaa---CUG-CCACuCUUGAGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 78362 | 0.67 | 0.999491 |
Target: 5'- cGGCGUGGUggGACccggcggcgccguGGUGGGAggACccgCGGg -3' miRNA: 3'- aCCGCAUUAa-CUG-------------CCACUCU--UGa--GCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 108029 | 0.73 | 0.954936 |
Target: 5'- gGGUGUGG-UGACGGUGGGGcUUCGc -3' miRNA: 3'- aCCGCAUUaACUGCCACUCUuGAGCc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 132921 | 0.67 | 0.999397 |
Target: 5'- gGGCGgacgggcaaacGAUGGUGAGAGgUCGc -3' miRNA: 3'- aCCGCauuaa------CUGCCACUCUUgAGCc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 135879 | 0.68 | 0.998861 |
Target: 5'- gGaGCGggg-UGGgGGUGGGAagcccccGCUCGGg -3' miRNA: 3'- aC-CGCauuaACUgCCACUCU-------UGAGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 136064 | 0.66 | 0.999841 |
Target: 5'- aUGGUGcuccagGGCGGUGGGAcggGCccgCGGa -3' miRNA: 3'- -ACCGCauuaa-CUGCCACUCU---UGa--GCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 140642 | 0.67 | 0.999245 |
Target: 5'- cGGuCGUGGUggugggGGUGGUGGGGAUUcCGGg -3' miRNA: 3'- aCC-GCAUUAa-----CUGCCACUCUUGA-GCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 142144 | 0.7 | 0.993214 |
Target: 5'- cUGGCGcug--GACGccGAGAACUUGGa -3' miRNA: 3'- -ACCGCauuaaCUGCcaCUCUUGAGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 142568 | 0.68 | 0.998381 |
Target: 5'- cUGGCGgcGUcGGCGGgagcagcGGGGGCggCGGg -3' miRNA: 3'- -ACCGCauUAaCUGCCa------CUCUUGa-GCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 148604 | 0.71 | 0.986959 |
Target: 5'- cGGCGUGAccGGCGGUGcGGucgCGGg -3' miRNA: 3'- aCCGCAUUaaCUGCCACuCUugaGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 152997 | 0.67 | 0.999245 |
Target: 5'- aUGGCGUcGgaGGCGGUGGGcagGAUgCGGu -3' miRNA: 3'- -ACCGCAuUaaCUGCCACUC---UUGaGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 160568 | 0.69 | 0.996248 |
Target: 5'- cGG-GUAuuugagGACGGUGuAGAuguACUCGGg -3' miRNA: 3'- aCCgCAUuaa---CUGCCAC-UCU---UGAGCC- -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 163414 | 0.69 | 0.994912 |
Target: 5'- -cGCGUAAUUGugGGUGuc-GCUUGa -3' miRNA: 3'- acCGCAUUAACugCCACucuUGAGCc -5' |
|||||||
1592 | 5' | -49.4 | NC_001347.2 | + | 165413 | 0.68 | 0.998292 |
Target: 5'- cGGCGcgcgccaacgAGUUGACGGUGAcgaguacguaggugGGACgCGGu -3' miRNA: 3'- aCCGCa---------UUAACUGCCACU--------------CUUGaGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home