miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15921 3' -52.6 NC_004065.1 + 194827 0.66 0.994791
Target:  5'- gCGGUGGCCgccacGUUcUCCagGCCGACc- -3'
miRNA:   3'- -GCCAUUGGa----CGAuAGGaaCGGCUGcu -5'
15921 3' -52.6 NC_004065.1 + 185912 0.66 0.994791
Target:  5'- uGGagAACCUGgaAUCCUUGUCG-Ca- -3'
miRNA:   3'- gCCa-UUGGACgaUAGGAACGGCuGcu -5'
15921 3' -52.6 NC_004065.1 + 172977 0.66 0.994791
Target:  5'- aCGG-GGCCuUGCccGUCg-UGCCGACGAc -3'
miRNA:   3'- -GCCaUUGG-ACGa-UAGgaACGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 78485 0.66 0.994791
Target:  5'- uCGGUGucCUUGCggcCCUUGCCGcCGu -3'
miRNA:   3'- -GCCAUu-GGACGauaGGAACGGCuGCu -5'
15921 3' -52.6 NC_004065.1 + 6682 0.66 0.994791
Target:  5'- gCGGggAACCcgaGUUG-CCgaugUGCCGACGAc -3'
miRNA:   3'- -GCCa-UUGGa--CGAUaGGa---ACGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 119515 0.66 0.994791
Target:  5'- gCGGcgAGCCUGUcgacAUCCUUGuCCGggGCGGc -3'
miRNA:   3'- -GCCa-UUGGACGa---UAGGAAC-GGC--UGCU- -5'
15921 3' -52.6 NC_004065.1 + 108676 0.66 0.993088
Target:  5'- gCGGaugGACCUGCUGUgCgUGCagaggagacuaGACGAg -3'
miRNA:   3'- -GCCa--UUGGACGAUAgGaACGg----------CUGCU- -5'
15921 3' -52.6 NC_004065.1 + 18976 0.66 0.991977
Target:  5'- uGGUGGCugugcugCUGCUGUCCcUGCUGuccCGGc -3'
miRNA:   3'- gCCAUUG-------GACGAUAGGaACGGCu--GCU- -5'
15921 3' -52.6 NC_004065.1 + 56876 0.67 0.989729
Target:  5'- aCGGgccuccGCCUGgUAUCCagcgUGCgGAUGAu -3'
miRNA:   3'- -GCCau----UGGACgAUAGGa---ACGgCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 142500 0.67 0.988363
Target:  5'- gGGUGGCgguCUGUcgacggcucuUGUCCcUGCUGGCGAg -3'
miRNA:   3'- gCCAUUG---GACG----------AUAGGaACGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 147187 0.67 0.988363
Target:  5'- cCGGcaaguACCUGCUcUCCggcuuccCCGACGAg -3'
miRNA:   3'- -GCCau---UGGACGAuAGGaac----GGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 41397 0.67 0.986859
Target:  5'- uGGU-ACgUGCUcgCC--GCCGGCGAc -3'
miRNA:   3'- gCCAuUGgACGAuaGGaaCGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 90669 0.67 0.986859
Target:  5'- gGGUug-CUGUUGgcccCCUUGCCGGCGc -3'
miRNA:   3'- gCCAuugGACGAUa---GGAACGGCUGCu -5'
15921 3' -52.6 NC_004065.1 + 208043 0.67 0.985211
Target:  5'- gGcGUGGCCgugGCggcccucaccGUCC-UGCCGACGAc -3'
miRNA:   3'- gC-CAUUGGa--CGa---------UAGGaACGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 27574 0.67 0.985211
Target:  5'- ----cACCUGCUAUCCgaUGCCGcCGu -3'
miRNA:   3'- gccauUGGACGAUAGGa-ACGGCuGCu -5'
15921 3' -52.6 NC_004065.1 + 136496 0.67 0.985211
Target:  5'- cCGGUAGCCggggaGCUgGUCCgggaaGCCaGGCGGg -3'
miRNA:   3'- -GCCAUUGGa----CGA-UAGGaa---CGG-CUGCU- -5'
15921 3' -52.6 NC_004065.1 + 27882 0.67 0.985211
Target:  5'- aCGGccggGACCUcCguccgAUCC-UGCCGACGGg -3'
miRNA:   3'- -GCCa---UUGGAcGa----UAGGaACGGCUGCU- -5'
15921 3' -52.6 NC_004065.1 + 136569 0.67 0.98341
Target:  5'- cCGGUAGCCggggaGCUgGUCCUgcgGuCCGGgGAu -3'
miRNA:   3'- -GCCAUUGGa----CGA-UAGGAa--C-GGCUgCU- -5'
15921 3' -52.6 NC_004065.1 + 48124 0.68 0.981447
Target:  5'- gCGGUggGACCUcGCgcaCgUUGCCGACGu -3'
miRNA:   3'- -GCCA--UUGGA-CGauaGgAACGGCUGCu -5'
15921 3' -52.6 NC_004065.1 + 176359 0.68 0.981447
Target:  5'- gGGaGAgaUGgUGUCCUUGCgGACGAg -3'
miRNA:   3'- gCCaUUggACgAUAGGAACGgCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.