miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15921 5' -58.7 NC_004065.1 + 168764 0.66 0.878413
Target:  5'- aGCCCGUCgACGc--CGCGCAGgccuUCGAc -3'
miRNA:   3'- -UGGGCAGgUGCaccGCGCGUCa---AGUU- -5'
15921 5' -58.7 NC_004065.1 + 194771 0.66 0.878413
Target:  5'- cGCgCCGUCC-CGagaccgGGuCGCGCAGggCGAu -3'
miRNA:   3'- -UG-GGCAGGuGCa-----CC-GCGCGUCaaGUU- -5'
15921 5' -58.7 NC_004065.1 + 78205 0.66 0.876338
Target:  5'- uACCCGUCgCGCGUcgagcgcgauuucuGGCuguacGCGCAcauGUUCAAa -3'
miRNA:   3'- -UGGGCAG-GUGCA--------------CCG-----CGCGU---CAAGUU- -5'
15921 5' -58.7 NC_004065.1 + 5245 0.66 0.871425
Target:  5'- cGCCCGcUCAgGUGGCGCuguuGCAGagCAc -3'
miRNA:   3'- -UGGGCaGGUgCACCGCG----CGUCaaGUu -5'
15921 5' -58.7 NC_004065.1 + 51175 0.66 0.871425
Target:  5'- aGCCCauGUCCACGUuuugguggagGGUGgCGCGG-UCAGa -3'
miRNA:   3'- -UGGG--CAGGUGCA----------CCGC-GCGUCaAGUU- -5'
15921 5' -58.7 NC_004065.1 + 124730 0.66 0.871425
Target:  5'- gGCCCGcgCCGCac-GCGUGguGUUCAGc -3'
miRNA:   3'- -UGGGCa-GGUGcacCGCGCguCAAGUU- -5'
15921 5' -58.7 NC_004065.1 + 169546 0.66 0.864237
Target:  5'- aACUgCGUCCugGagGGCGCgGCAG-UCGAg -3'
miRNA:   3'- -UGG-GCAGGugCa-CCGCG-CGUCaAGUU- -5'
15921 5' -58.7 NC_004065.1 + 168166 0.66 0.856853
Target:  5'- gGCCCuUCCGCGcggGGCGCGaCAGcggcgCGAc -3'
miRNA:   3'- -UGGGcAGGUGCa--CCGCGC-GUCaa---GUU- -5'
15921 5' -58.7 NC_004065.1 + 164762 0.66 0.849281
Target:  5'- -gCCGUgCgguACGUGGCGUGCAGggagaUCAu -3'
miRNA:   3'- ugGGCAgG---UGCACCGCGCGUCa----AGUu -5'
15921 5' -58.7 NC_004065.1 + 78542 0.66 0.849281
Target:  5'- aGCCCGUCCGCGUGcCGCuGCuccUCu- -3'
miRNA:   3'- -UGGGCAGGUGCACcGCG-CGucaAGuu -5'
15921 5' -58.7 NC_004065.1 + 195527 0.66 0.849281
Target:  5'- uCCCGUCCAgCGcGGCGCGaucuaugaaCAGgUCAGa -3'
miRNA:   3'- uGGGCAGGU-GCaCCGCGC---------GUCaAGUU- -5'
15921 5' -58.7 NC_004065.1 + 64832 0.66 0.840738
Target:  5'- cGCCCG-CCaACGUgcucuucuaccccGGCGUGguGUUCGc -3'
miRNA:   3'- -UGGGCaGG-UGCA-------------CCGCGCguCAAGUu -5'
15921 5' -58.7 NC_004065.1 + 142358 0.67 0.834391
Target:  5'- aGCaCCGUCagagauGCGgucgggggugucgaaGGCGCGCAGUUCGc -3'
miRNA:   3'- -UG-GGCAGg-----UGCa--------------CCGCGCGUCAAGUu -5'
15921 5' -58.7 NC_004065.1 + 229530 0.67 0.817214
Target:  5'- cCCCGccuUCCGCGgacgcGGCGCGCGGccCGGa -3'
miRNA:   3'- uGGGC---AGGUGCa----CCGCGCGUCaaGUU- -5'
15921 5' -58.7 NC_004065.1 + 172067 0.67 0.808788
Target:  5'- -gCgGUCCucCGUGGcCGcCGCGGUUCGAg -3'
miRNA:   3'- ugGgCAGGu-GCACC-GC-GCGUCAAGUU- -5'
15921 5' -58.7 NC_004065.1 + 4205 0.67 0.800212
Target:  5'- -aCCGU-CAUGUGGCGCuCGGUUCu- -3'
miRNA:   3'- ugGGCAgGUGCACCGCGcGUCAAGuu -5'
15921 5' -58.7 NC_004065.1 + 121480 0.68 0.782643
Target:  5'- gGCgCGUCCGCG-GGCGUGaagguggcgaAGUUCAc -3'
miRNA:   3'- -UGgGCAGGUGCaCCGCGCg---------UCAAGUu -5'
15921 5' -58.7 NC_004065.1 + 71306 0.69 0.688546
Target:  5'- cGCUgGUCgCACGUcgGGCGCGCAGaccauucuUUCAAa -3'
miRNA:   3'- -UGGgCAG-GUGCA--CCGCGCGUC--------AAGUU- -5'
15921 5' -58.7 NC_004065.1 + 214012 0.7 0.67876
Target:  5'- cACCCGgCCauguGCGUGGCuGCG-AGUUCAAg -3'
miRNA:   3'- -UGGGCaGG----UGCACCG-CGCgUCAAGUU- -5'
15921 5' -58.7 NC_004065.1 + 7632 1.05 0.004118
Target:  5'- gACCCGUCCACGUGGCGCGCAGUUCAAc -3'
miRNA:   3'- -UGGGCAGGUGCACCGCGCGUCAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.