Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 5619 | 1.08 | 0.006571 |
Target: 5'- gACUUCGGGCAGGAUACCACGGUGACGc -3' miRNA: 3'- -UGAAGCCCGUCCUAUGGUGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 105656 | 0.85 | 0.176981 |
Target: 5'- cUUUCGcGGC-GGAUGCCGCGGUGACGa -3' miRNA: 3'- uGAAGC-CCGuCCUAUGGUGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 35601 | 0.76 | 0.549159 |
Target: 5'- gGCggugUCGGuGCGGGAU-CCACGGcGGCGg -3' miRNA: 3'- -UGa---AGCC-CGUCCUAuGGUGCCaCUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 122457 | 0.74 | 0.658075 |
Target: 5'- --cUCGGGCAGGG--UCAgGGUGGCGu -3' miRNA: 3'- ugaAGCCCGUCCUauGGUgCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 62343 | 0.73 | 0.687769 |
Target: 5'- gGC-UCGGGCuGGGUcgucgguuuucgACgGCGGUGGCGg -3' miRNA: 3'- -UGaAGCCCGuCCUA------------UGgUGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 206831 | 0.71 | 0.808974 |
Target: 5'- -aUUCGGGCGGGAU-CgGCGG-GGCc -3' miRNA: 3'- ugAAGCCCGUCCUAuGgUGCCaCUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 206326 | 0.71 | 0.800334 |
Target: 5'- uGCUugUCGGGCGGGugucugGCCuCGGUacgGACGg -3' miRNA: 3'- -UGA--AGCCCGUCCua----UGGuGCCA---CUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 28714 | 0.71 | 0.797713 |
Target: 5'- ----aGGGCggagauccuguccgAGGAggagACCGCGGUGGCGg -3' miRNA: 3'- ugaagCCCG--------------UCCUa---UGGUGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 92424 | 0.71 | 0.825791 |
Target: 5'- cGCUUaucgggCGGGCAGGGcguUGCCAUGGUuACa -3' miRNA: 3'- -UGAA------GCCCGUCCU---AUGGUGCCAcUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 191299 | 0.7 | 0.84115 |
Target: 5'- uCUgaggCGGaGCAGGAUggugccgGCCGCGcGUGACa -3' miRNA: 3'- uGAa---GCC-CGUCCUA-------UGGUGC-CACUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 2719 | 0.7 | 0.833953 |
Target: 5'- cGCgagCGuGGCAGGAaacAUCACGGUGAaCGa -3' miRNA: 3'- -UGaa-GC-CCGUCCUa--UGGUGCCACU-GC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 59573 | 0.69 | 0.905019 |
Target: 5'- gGCgaCGGGCAGcGAcUGCgCAUGGUcGACGa -3' miRNA: 3'- -UGaaGCCCGUC-CU-AUG-GUGCCA-CUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 25122 | 0.69 | 0.891814 |
Target: 5'- -gUUCGGGCGGuucugauggaacuGAgAUCACGGUGugGu -3' miRNA: 3'- ugAAGCCCGUC-------------CUaUGGUGCCACugC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 121621 | 0.69 | 0.885862 |
Target: 5'- ----aGGGCAGGAUGCCcccgaGGaUGGCGu -3' miRNA: 3'- ugaagCCCGUCCUAUGGug---CC-ACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 152750 | 0.68 | 0.92745 |
Target: 5'- gUUUCGGGgGGuGGUAgCgguaACGGUGGCGg -3' miRNA: 3'- uGAAGCCCgUC-CUAUgG----UGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 141609 | 0.68 | 0.910964 |
Target: 5'- gGCggCGGGCuccGcUGCCgGCGGUGGCGg -3' miRNA: 3'- -UGaaGCCCGuc-CuAUGG-UGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 77155 | 0.68 | 0.916685 |
Target: 5'- --gUUGGGguGGAgguugaaGCUGCGGUGGCu -3' miRNA: 3'- ugaAGCCCguCCUa------UGGUGCCACUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 141645 | 0.68 | 0.916685 |
Target: 5'- gACggaGGGCGGuggcGGUGCCGCGGccgcgGACGa -3' miRNA: 3'- -UGaagCCCGUC----CUAUGGUGCCa----CUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 219435 | 0.68 | 0.922181 |
Target: 5'- ---gUGGGCGGGAU-CUACGGgaacucaggUGACGg -3' miRNA: 3'- ugaaGCCCGUCCUAuGGUGCC---------ACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 100769 | 0.68 | 0.92745 |
Target: 5'- aGCUgugGGGCGGGcucaGCUucgcGCGGUGACGu -3' miRNA: 3'- -UGAag-CCCGUCCua--UGG----UGCCACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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