Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 104554 | 0.67 | 0.937308 |
Target: 5'- ---aCGGGCAGGugcgGCCGCuGUGcACGc -3' miRNA: 3'- ugaaGCCCGUCCua--UGGUGcCAC-UGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 79953 | 0.67 | 0.94009 |
Target: 5'- aGCcgUCGGGCAGGGUGaggacguacucgaCACGGUcgccGACc -3' miRNA: 3'- -UGa-AGCCCGUCCUAUg------------GUGCCA----CUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 27833 | 0.67 | 0.941899 |
Target: 5'- ---cCGGGguGGuggcuggccgugGUGCCGCGG-GGCGa -3' miRNA: 3'- ugaaGCCCguCC------------UAUGGUGCCaCUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 40098 | 0.67 | 0.941899 |
Target: 5'- gACUUCGGuGUuguuGGcgGCCGCuauauugguGGUGGCGa -3' miRNA: 3'- -UGAAGCC-CGu---CCuaUGGUG---------CCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 136101 | 0.67 | 0.941899 |
Target: 5'- ---cUGGGCAGGGUGCaaugaaGCGGgGACc -3' miRNA: 3'- ugaaGCCCGUCCUAUGg-----UGCCaCUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 169144 | 0.67 | 0.946265 |
Target: 5'- gACgUCGGGCGGGAaUACgAgGGccUGAUGg -3' miRNA: 3'- -UGaAGCCCGUCCU-AUGgUgCC--ACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 228306 | 0.67 | 0.950006 |
Target: 5'- uACUUUGGGUGGGAcggcgggUGCUuuggGCGGUggGACGu -3' miRNA: 3'- -UGAAGCCCGUCCU-------AUGG----UGCCA--CUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 118685 | 0.67 | 0.95041 |
Target: 5'- ---gCGGagaucCAGGcgACCACGGUGACc -3' miRNA: 3'- ugaaGCCc----GUCCuaUGGUGCCACUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 202240 | 0.67 | 0.958047 |
Target: 5'- uGCUg-GGGCAGGAgGCCcuccagACGGcGGCGc -3' miRNA: 3'- -UGAagCCCGUCCUaUGG------UGCCaCUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 55782 | 0.67 | 0.958047 |
Target: 5'- --cUCGGcgccgaGCAGGcgAUCGCGGcUGACGa -3' miRNA: 3'- ugaAGCC------CGUCCuaUGGUGCC-ACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 80377 | 0.66 | 0.961205 |
Target: 5'- cGCUgCGGcgcguGCAGGGccUGCCGacggcgcCGGUGACGg -3' miRNA: 3'- -UGAaGCC-----CGUCCU--AUGGU-------GCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 172084 | 0.66 | 0.961546 |
Target: 5'- gGCUgUGGGUggaggggccggGGGAggcggcucugACCGCGGUGGCu -3' miRNA: 3'- -UGAaGCCCG-----------UCCUa---------UGGUGCCACUGc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 11802 | 0.66 | 0.961546 |
Target: 5'- cCUagGGGUuuuuauuGGAUGCCGgacggaguCGGUGGCGg -3' miRNA: 3'- uGAagCCCGu------CCUAUGGU--------GCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 74585 | 0.66 | 0.961546 |
Target: 5'- ----aGGGaCAGuuGGUGCCGuCGGUGGCGg -3' miRNA: 3'- ugaagCCC-GUC--CUAUGGU-GCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 30300 | 0.66 | 0.962887 |
Target: 5'- uGCgggUCGGGCAGGAU-CCuuuucgcgucgaguCGGUGcugaGCGu -3' miRNA: 3'- -UGa--AGCCCGUCCUAuGGu-------------GCCAC----UGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 127214 | 0.66 | 0.964517 |
Target: 5'- -gUUCGGGagcGGcgGCCgcgaggaucgggcGCGGUGGCGg -3' miRNA: 3'- ugAAGCCCgu-CCuaUGG-------------UGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 98075 | 0.66 | 0.964837 |
Target: 5'- --gUCGGGCAGGu--CCAUGGgGAa- -3' miRNA: 3'- ugaAGCCCGUCCuauGGUGCCaCUgc -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 29427 | 0.66 | 0.967925 |
Target: 5'- ----aGGGCAGGGagaagacggUGCCGggguaGGUGGCGg -3' miRNA: 3'- ugaagCCCGUCCU---------AUGGUg----CCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 169842 | 0.66 | 0.969104 |
Target: 5'- ---aCGGGCucGGGA-ACCgcgacggguucggggACGGUGACGg -3' miRNA: 3'- ugaaGCCCG--UCCUaUGG---------------UGCCACUGC- -5' |
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15925 | 3' | -55.3 | NC_004065.1 | + | 18138 | 0.66 | 0.970535 |
Target: 5'- cGCcgCGGGaCGGGAUGuuggcgguaucguCCGCGG-GGCGu -3' miRNA: 3'- -UGaaGCCC-GUCCUAU-------------GGUGCCaCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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