miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15925 3' -55.3 NC_004065.1 + 40098 0.67 0.941899
Target:  5'- gACUUCGGuGUuguuGGcgGCCGCuauauugguGGUGGCGa -3'
miRNA:   3'- -UGAAGCC-CGu---CCuaUGGUG---------CCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 79953 0.67 0.94009
Target:  5'- aGCcgUCGGGCAGGGUGaggacguacucgaCACGGUcgccGACc -3'
miRNA:   3'- -UGa-AGCCCGUCCUAUg------------GUGCCA----CUGc -5'
15925 3' -55.3 NC_004065.1 + 104554 0.67 0.937308
Target:  5'- ---aCGGGCAGGugcgGCCGCuGUGcACGc -3'
miRNA:   3'- ugaaGCCCGUCCua--UGGUGcCAC-UGC- -5'
15925 3' -55.3 NC_004065.1 + 152750 0.68 0.92745
Target:  5'- gUUUCGGGgGGuGGUAgCgguaACGGUGGCGg -3'
miRNA:   3'- uGAAGCCCgUC-CUAUgG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 100769 0.68 0.92745
Target:  5'- aGCUgugGGGCGGGcucaGCUucgcGCGGUGACGu -3'
miRNA:   3'- -UGAag-CCCGUCCua--UGG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 219435 0.68 0.922181
Target:  5'- ---gUGGGCGGGAU-CUACGGgaacucaggUGACGg -3'
miRNA:   3'- ugaaGCCCGUCCUAuGGUGCC---------ACUGC- -5'
15925 3' -55.3 NC_004065.1 + 141645 0.68 0.916685
Target:  5'- gACggaGGGCGGuggcGGUGCCGCGGccgcgGACGa -3'
miRNA:   3'- -UGaagCCCGUC----CUAUGGUGCCa----CUGC- -5'
15925 3' -55.3 NC_004065.1 + 77155 0.68 0.916685
Target:  5'- --gUUGGGguGGAgguugaaGCUGCGGUGGCu -3'
miRNA:   3'- ugaAGCCCguCCUa------UGGUGCCACUGc -5'
15925 3' -55.3 NC_004065.1 + 141609 0.68 0.910964
Target:  5'- gGCggCGGGCuccGcUGCCgGCGGUGGCGg -3'
miRNA:   3'- -UGaaGCCCGuc-CuAUGG-UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 59573 0.69 0.905019
Target:  5'- gGCgaCGGGCAGcGAcUGCgCAUGGUcGACGa -3'
miRNA:   3'- -UGaaGCCCGUC-CU-AUG-GUGCCA-CUGC- -5'
15925 3' -55.3 NC_004065.1 + 25122 0.69 0.891814
Target:  5'- -gUUCGGGCGGuucugauggaacuGAgAUCACGGUGugGu -3'
miRNA:   3'- ugAAGCCCGUC-------------CUaUGGUGCCACugC- -5'
15925 3' -55.3 NC_004065.1 + 121621 0.69 0.885862
Target:  5'- ----aGGGCAGGAUGCCcccgaGGaUGGCGu -3'
miRNA:   3'- ugaagCCCGUCCUAUGGug---CC-ACUGC- -5'
15925 3' -55.3 NC_004065.1 + 191299 0.7 0.84115
Target:  5'- uCUgaggCGGaGCAGGAUggugccgGCCGCGcGUGACa -3'
miRNA:   3'- uGAa---GCC-CGUCCUA-------UGGUGC-CACUGc -5'
15925 3' -55.3 NC_004065.1 + 2719 0.7 0.833953
Target:  5'- cGCgagCGuGGCAGGAaacAUCACGGUGAaCGa -3'
miRNA:   3'- -UGaa-GC-CCGUCCUa--UGGUGCCACU-GC- -5'
15925 3' -55.3 NC_004065.1 + 92424 0.71 0.825791
Target:  5'- cGCUUaucgggCGGGCAGGGcguUGCCAUGGUuACa -3'
miRNA:   3'- -UGAA------GCCCGUCCU---AUGGUGCCAcUGc -5'
15925 3' -55.3 NC_004065.1 + 206831 0.71 0.808974
Target:  5'- -aUUCGGGCGGGAU-CgGCGG-GGCc -3'
miRNA:   3'- ugAAGCCCGUCCUAuGgUGCCaCUGc -5'
15925 3' -55.3 NC_004065.1 + 206326 0.71 0.800334
Target:  5'- uGCUugUCGGGCGGGugucugGCCuCGGUacgGACGg -3'
miRNA:   3'- -UGA--AGCCCGUCCua----UGGuGCCA---CUGC- -5'
15925 3' -55.3 NC_004065.1 + 28714 0.71 0.797713
Target:  5'- ----aGGGCggagauccuguccgAGGAggagACCGCGGUGGCGg -3'
miRNA:   3'- ugaagCCCG--------------UCCUa---UGGUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 62343 0.73 0.687769
Target:  5'- gGC-UCGGGCuGGGUcgucgguuuucgACgGCGGUGGCGg -3'
miRNA:   3'- -UGaAGCCCGuCCUA------------UGgUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 122457 0.74 0.658075
Target:  5'- --cUCGGGCAGGG--UCAgGGUGGCGu -3'
miRNA:   3'- ugaAGCCCGUCCUauGGUgCCACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.