miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15925 3' -55.3 NC_004065.1 + 98075 0.66 0.964837
Target:  5'- --gUCGGGCAGGu--CCAUGGgGAa- -3'
miRNA:   3'- ugaAGCCCGUCCuauGGUGCCaCUgc -5'
15925 3' -55.3 NC_004065.1 + 100769 0.68 0.92745
Target:  5'- aGCUgugGGGCGGGcucaGCUucgcGCGGUGACGu -3'
miRNA:   3'- -UGAag-CCCGUCCua--UGG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 104554 0.67 0.937308
Target:  5'- ---aCGGGCAGGugcgGCCGCuGUGcACGc -3'
miRNA:   3'- ugaaGCCCGUCCua--UGGUGcCAC-UGC- -5'
15925 3' -55.3 NC_004065.1 + 105656 0.85 0.176981
Target:  5'- cUUUCGcGGC-GGAUGCCGCGGUGACGa -3'
miRNA:   3'- uGAAGC-CCGuCCUAUGGUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 118685 0.67 0.95041
Target:  5'- ---gCGGagaucCAGGcgACCACGGUGACc -3'
miRNA:   3'- ugaaGCCc----GUCCuaUGGUGCCACUGc -5'
15925 3' -55.3 NC_004065.1 + 121621 0.69 0.885862
Target:  5'- ----aGGGCAGGAUGCCcccgaGGaUGGCGu -3'
miRNA:   3'- ugaagCCCGUCCUAUGGug---CC-ACUGC- -5'
15925 3' -55.3 NC_004065.1 + 122457 0.74 0.658075
Target:  5'- --cUCGGGCAGGG--UCAgGGUGGCGu -3'
miRNA:   3'- ugaAGCCCGUCCUauGGUgCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 127214 0.66 0.964517
Target:  5'- -gUUCGGGagcGGcgGCCgcgaggaucgggcGCGGUGGCGg -3'
miRNA:   3'- ugAAGCCCgu-CCuaUGG-------------UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 136101 0.67 0.941899
Target:  5'- ---cUGGGCAGGGUGCaaugaaGCGGgGACc -3'
miRNA:   3'- ugaaGCCCGUCCUAUGg-----UGCCaCUGc -5'
15925 3' -55.3 NC_004065.1 + 141609 0.68 0.910964
Target:  5'- gGCggCGGGCuccGcUGCCgGCGGUGGCGg -3'
miRNA:   3'- -UGaaGCCCGuc-CuAUGG-UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 141645 0.68 0.916685
Target:  5'- gACggaGGGCGGuggcGGUGCCGCGGccgcgGACGa -3'
miRNA:   3'- -UGaagCCCGUC----CUAUGGUGCCa----CUGC- -5'
15925 3' -55.3 NC_004065.1 + 152750 0.68 0.92745
Target:  5'- gUUUCGGGgGGuGGUAgCgguaACGGUGGCGg -3'
miRNA:   3'- uGAAGCCCgUC-CUAUgG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 169144 0.67 0.946265
Target:  5'- gACgUCGGGCGGGAaUACgAgGGccUGAUGg -3'
miRNA:   3'- -UGaAGCCCGUCCU-AUGgUgCC--ACUGC- -5'
15925 3' -55.3 NC_004065.1 + 169842 0.66 0.969104
Target:  5'- ---aCGGGCucGGGA-ACCgcgacggguucggggACGGUGACGg -3'
miRNA:   3'- ugaaGCCCG--UCCUaUGG---------------UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 172084 0.66 0.961546
Target:  5'- gGCUgUGGGUggaggggccggGGGAggcggcucugACCGCGGUGGCu -3'
miRNA:   3'- -UGAaGCCCG-----------UCCUa---------UGGUGCCACUGc -5'
15925 3' -55.3 NC_004065.1 + 184789 0.66 0.973514
Target:  5'- cGCgaCGGGCggAGGAgg--ACGGUGACGc -3'
miRNA:   3'- -UGaaGCCCG--UCCUauggUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 191299 0.7 0.84115
Target:  5'- uCUgaggCGGaGCAGGAUggugccgGCCGCGcGUGACa -3'
miRNA:   3'- uGAa---GCC-CGUCCUA-------UGGUGC-CACUGc -5'
15925 3' -55.3 NC_004065.1 + 202240 0.67 0.958047
Target:  5'- uGCUg-GGGCAGGAgGCCcuccagACGGcGGCGc -3'
miRNA:   3'- -UGAagCCCGUCCUaUGG------UGCCaCUGC- -5'
15925 3' -55.3 NC_004065.1 + 206326 0.71 0.800334
Target:  5'- uGCUugUCGGGCGGGugucugGCCuCGGUacgGACGg -3'
miRNA:   3'- -UGA--AGCCCGUCCua----UGGuGCCA---CUGC- -5'
15925 3' -55.3 NC_004065.1 + 206831 0.71 0.808974
Target:  5'- -aUUCGGGCGGGAU-CgGCGG-GGCc -3'
miRNA:   3'- ugAAGCCCGUCCUAuGgUGCCaCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.