Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 206326 | 0.71 | 0.800334 |
Target: 5'- uGCUugUCGGGCGGGugucugGCCuCGGUacgGACGg -3' miRNA: 3'- -UGA--AGCCCGUCCua----UGGuGCCA---CUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 202240 | 0.67 | 0.958047 |
Target: 5'- uGCUg-GGGCAGGAgGCCcuccagACGGcGGCGc -3' miRNA: 3'- -UGAagCCCGUCCUaUGG------UGCCaCUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 11802 | 0.66 | 0.961546 |
Target: 5'- cCUagGGGUuuuuauuGGAUGCCGgacggaguCGGUGGCGg -3' miRNA: 3'- uGAagCCCGu------CCUAUGGU--------GCCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 184789 | 0.66 | 0.973514 |
Target: 5'- cGCgaCGGGCggAGGAgg--ACGGUGACGc -3' miRNA: 3'- -UGaaGCCCG--UCCUauggUGCCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 141609 | 0.68 | 0.910964 |
Target: 5'- gGCggCGGGCuccGcUGCCgGCGGUGGCGg -3' miRNA: 3'- -UGaaGCCCGuc-CuAUGG-UGCCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 141645 | 0.68 | 0.916685 |
Target: 5'- gACggaGGGCGGuggcGGUGCCGCGGccgcgGACGa -3' miRNA: 3'- -UGaagCCCGUC----CUAUGGUGCCa----CUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 219435 | 0.68 | 0.922181 |
Target: 5'- ---gUGGGCGGGAU-CUACGGgaacucaggUGACGg -3' miRNA: 3'- ugaaGCCCGUCCUAuGGUGCC---------ACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 104554 | 0.67 | 0.937308 |
Target: 5'- ---aCGGGCAGGugcgGCCGCuGUGcACGc -3' miRNA: 3'- ugaaGCCCGUCCua--UGGUGcCAC-UGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 5619 | 1.08 | 0.006571 |
Target: 5'- gACUUCGGGCAGGAUACCACGGUGACGc -3' miRNA: 3'- -UGAAGCCCGUCCUAUGGUGCCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 118685 | 0.67 | 0.95041 |
Target: 5'- ---gCGGagaucCAGGcgACCACGGUGACc -3' miRNA: 3'- ugaaGCCc----GUCCuaUGGUGCCACUGc -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 136101 | 0.67 | 0.941899 |
Target: 5'- ---cUGGGCAGGGUGCaaugaaGCGGgGACc -3' miRNA: 3'- ugaaGCCCGUCCUAUGg-----UGCCaCUGc -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 40098 | 0.67 | 0.941899 |
Target: 5'- gACUUCGGuGUuguuGGcgGCCGCuauauugguGGUGGCGa -3' miRNA: 3'- -UGAAGCC-CGu---CCuaUGGUG---------CCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 206831 | 0.71 | 0.808974 |
Target: 5'- -aUUCGGGCGGGAU-CgGCGG-GGCc -3' miRNA: 3'- ugAAGCCCGUCCUAuGgUGCCaCUGc -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 169144 | 0.67 | 0.946265 |
Target: 5'- gACgUCGGGCGGGAaUACgAgGGccUGAUGg -3' miRNA: 3'- -UGaAGCCCGUCCU-AUGgUgCC--ACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 121621 | 0.69 | 0.885862 |
Target: 5'- ----aGGGCAGGAUGCCcccgaGGaUGGCGu -3' miRNA: 3'- ugaagCCCGUCCUAUGGug---CC-ACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 27833 | 0.67 | 0.941899 |
Target: 5'- ---cCGGGguGGuggcuggccgugGUGCCGCGG-GGCGa -3' miRNA: 3'- ugaaGCCCguCC------------UAUGGUGCCaCUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 228306 | 0.67 | 0.950006 |
Target: 5'- uACUUUGGGUGGGAcggcgggUGCUuuggGCGGUggGACGu -3' miRNA: 3'- -UGAAGCCCGUCCU-------AUGG----UGCCA--CUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 80377 | 0.66 | 0.961205 |
Target: 5'- cGCUgCGGcgcguGCAGGGccUGCCGacggcgcCGGUGACGg -3' miRNA: 3'- -UGAaGCC-----CGUCCU--AUGGU-------GCCACUGC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 25122 | 0.69 | 0.891814 |
Target: 5'- -gUUCGGGCGGuucugauggaacuGAgAUCACGGUGugGu -3' miRNA: 3'- ugAAGCCCGUC-------------CUaUGGUGCCACugC- -5' |
|||||||
15925 | 3' | -55.3 | NC_004065.1 | + | 77155 | 0.68 | 0.916685 |
Target: 5'- --gUUGGGguGGAgguugaaGCUGCGGUGGCu -3' miRNA: 3'- ugaAGCCCguCCUa------UGGUGCCACUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home