miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15925 3' -55.3 NC_004065.1 + 229877 0.66 0.973514
Target:  5'- uCUUCuuGGCAcGGUGCCAcgcccuCGGUGACGu -3'
miRNA:   3'- uGAAGc-CCGUcCUAUGGU------GCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 184789 0.66 0.973514
Target:  5'- cGCgaCGGGCggAGGAgg--ACGGUGACGc -3'
miRNA:   3'- -UGaaGCCCG--UCCUauggUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 141609 0.68 0.910964
Target:  5'- gGCggCGGGCuccGcUGCCgGCGGUGGCGg -3'
miRNA:   3'- -UGaaGCCCGuc-CuAUGG-UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 118685 0.67 0.95041
Target:  5'- ---gCGGagaucCAGGcgACCACGGUGACc -3'
miRNA:   3'- ugaaGCCc----GUCCuaUGGUGCCACUGc -5'
15925 3' -55.3 NC_004065.1 + 59573 0.69 0.905019
Target:  5'- gGCgaCGGGCAGcGAcUGCgCAUGGUcGACGa -3'
miRNA:   3'- -UGaaGCCCGUC-CU-AUG-GUGCCA-CUGC- -5'
15925 3' -55.3 NC_004065.1 + 191299 0.7 0.84115
Target:  5'- uCUgaggCGGaGCAGGAUggugccgGCCGCGcGUGACa -3'
miRNA:   3'- uGAa---GCC-CGUCCUA-------UGGUGC-CACUGc -5'
15925 3' -55.3 NC_004065.1 + 2719 0.7 0.833953
Target:  5'- cGCgagCGuGGCAGGAaacAUCACGGUGAaCGa -3'
miRNA:   3'- -UGaa-GC-CCGUCCUa--UGGUGCCACU-GC- -5'
15925 3' -55.3 NC_004065.1 + 92424 0.71 0.825791
Target:  5'- cGCUUaucgggCGGGCAGGGcguUGCCAUGGUuACa -3'
miRNA:   3'- -UGAA------GCCCGUCCU---AUGGUGCCAcUGc -5'
15925 3' -55.3 NC_004065.1 + 62343 0.73 0.687769
Target:  5'- gGC-UCGGGCuGGGUcgucgguuuucgACgGCGGUGGCGg -3'
miRNA:   3'- -UGaAGCCCGuCCUA------------UGgUGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 122457 0.74 0.658075
Target:  5'- --cUCGGGCAGGG--UCAgGGUGGCGu -3'
miRNA:   3'- ugaAGCCCGUCCUauGGUgCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 152750 0.68 0.92745
Target:  5'- gUUUCGGGgGGuGGUAgCgguaACGGUGGCGg -3'
miRNA:   3'- uGAAGCCCgUC-CUAUgG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 100769 0.68 0.92745
Target:  5'- aGCUgugGGGCGGGcucaGCUucgcGCGGUGACGu -3'
miRNA:   3'- -UGAag-CCCGUCCua--UGG----UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 18138 0.66 0.970535
Target:  5'- cGCcgCGGGaCGGGAUGuuggcgguaucguCCGCGG-GGCGu -3'
miRNA:   3'- -UGaaGCCC-GUCCUAU-------------GGUGCCaCUGC- -5'
15925 3' -55.3 NC_004065.1 + 169842 0.66 0.969104
Target:  5'- ---aCGGGCucGGGA-ACCgcgacggguucggggACGGUGACGg -3'
miRNA:   3'- ugaaGCCCG--UCCUaUGG---------------UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 98075 0.66 0.964837
Target:  5'- --gUCGGGCAGGu--CCAUGGgGAa- -3'
miRNA:   3'- ugaAGCCCGUCCuauGGUGCCaCUgc -5'
15925 3' -55.3 NC_004065.1 + 29427 0.66 0.967925
Target:  5'- ----aGGGCAGGGagaagacggUGCCGggguaGGUGGCGg -3'
miRNA:   3'- ugaagCCCGUCCU---------AUGGUg----CCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 127214 0.66 0.964517
Target:  5'- -gUUCGGGagcGGcgGCCgcgaggaucgggcGCGGUGGCGg -3'
miRNA:   3'- ugAAGCCCgu-CCuaUGG-------------UGCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 74585 0.66 0.961546
Target:  5'- ----aGGGaCAGuuGGUGCCGuCGGUGGCGg -3'
miRNA:   3'- ugaagCCC-GUC--CUAUGGU-GCCACUGC- -5'
15925 3' -55.3 NC_004065.1 + 55782 0.67 0.958047
Target:  5'- --cUCGGcgccgaGCAGGcgAUCGCGGcUGACGa -3'
miRNA:   3'- ugaAGCC------CGUCCuaUGGUGCC-ACUGC- -5'
15925 3' -55.3 NC_004065.1 + 79953 0.67 0.94009
Target:  5'- aGCcgUCGGGCAGGGUGaggacguacucgaCACGGUcgccGACc -3'
miRNA:   3'- -UGa-AGCCCGUCCUAUg------------GUGCCA----CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.