miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15926 3' -57 NC_004065.1 + 185469 0.66 0.95274
Target:  5'- ----gGUGGugGUgGUGCGgGUCgGGAg -3'
miRNA:   3'- uguggCACCugCA-CAUGCgCAGgCCU- -5'
15926 3' -57 NC_004065.1 + 141163 0.66 0.948804
Target:  5'- gGCAcCCG-GGACGUGUuucaGUUCGGAc -3'
miRNA:   3'- -UGU-GGCaCCUGCACAugcgCAGGCCU- -5'
15926 3' -57 NC_004065.1 + 29497 0.66 0.944656
Target:  5'- uCGCCaUGGACGcccUGUGCGCGgcgaUCCGa- -3'
miRNA:   3'- uGUGGcACCUGC---ACAUGCGC----AGGCcu -5'
15926 3' -57 NC_004065.1 + 6672 0.66 0.944656
Target:  5'- cGCAUCGUGGGaagGUACGUGgCUGGu -3'
miRNA:   3'- -UGUGGCACCUgcaCAUGCGCaGGCCu -5'
15926 3' -57 NC_004065.1 + 119628 0.66 0.940295
Target:  5'- gACGCCGUcGGcCGUG-GCGUGUUCGa- -3'
miRNA:   3'- -UGUGGCA-CCuGCACaUGCGCAGGCcu -5'
15926 3' -57 NC_004065.1 + 90084 0.66 0.935717
Target:  5'- uGCGCgCGUGaGuGCGUGUACcCGUCCGu- -3'
miRNA:   3'- -UGUG-GCAC-C-UGCACAUGcGCAGGCcu -5'
15926 3' -57 NC_004065.1 + 97813 0.67 0.930923
Target:  5'- uCACCGgcaGGuuGUGUACGCGg-UGGAa -3'
miRNA:   3'- uGUGGCa--CCugCACAUGCGCagGCCU- -5'
15926 3' -57 NC_004065.1 + 208862 0.67 0.930923
Target:  5'- -aGCCGUucgagacggagaGGACG-GUGCGCGgugaCGGAc -3'
miRNA:   3'- ugUGGCA------------CCUGCaCAUGCGCag--GCCU- -5'
15926 3' -57 NC_004065.1 + 223976 0.67 0.930923
Target:  5'- uACACCGUc--UGUGagcaACGUGUCCGGAc -3'
miRNA:   3'- -UGUGGCAccuGCACa---UGCGCAGGCCU- -5'
15926 3' -57 NC_004065.1 + 71541 0.67 0.925911
Target:  5'- uAUAUCGcgGGACGg--ACGUGUUCGGGg -3'
miRNA:   3'- -UGUGGCa-CCUGCacaUGCGCAGGCCU- -5'
15926 3' -57 NC_004065.1 + 109636 0.67 0.909569
Target:  5'- cCACCGUcgaGGGCGUccUGCGCGacUCCGGc -3'
miRNA:   3'- uGUGGCA---CCUGCAc-AUGCGC--AGGCCu -5'
15926 3' -57 NC_004065.1 + 91195 0.67 0.90841
Target:  5'- aGCGCCGUcGGCGU--GCGCGgcaucggcgccgCCGGAg -3'
miRNA:   3'- -UGUGGCAcCUGCAcaUGCGCa-----------GGCCU- -5'
15926 3' -57 NC_004065.1 + 152175 0.68 0.895101
Target:  5'- uGCACCGgGGAgcccacgcCGCGUCCGGAg -3'
miRNA:   3'- -UGUGGCaCCUgcacau--GCGCAGGCCU- -5'
15926 3' -57 NC_004065.1 + 72860 0.68 0.891294
Target:  5'- aACGCCGuUGGugGUGUACGacUCCa-- -3'
miRNA:   3'- -UGUGGC-ACCugCACAUGCgcAGGccu -5'
15926 3' -57 NC_004065.1 + 186394 0.68 0.884784
Target:  5'- gGCugCGuUGGugGUu--CGUGUCUGGAa -3'
miRNA:   3'- -UGugGC-ACCugCAcauGCGCAGGCCU- -5'
15926 3' -57 NC_004065.1 + 176491 0.7 0.80927
Target:  5'- gGCACCG-GGACG-GUGgGUGUCCugucucGGAc -3'
miRNA:   3'- -UGUGGCaCCUGCaCAUgCGCAGG------CCU- -5'
15926 3' -57 NC_004065.1 + 101419 0.7 0.783463
Target:  5'- -gACCGUGGggGCGgcugGCGCGUgCGGAu -3'
miRNA:   3'- ugUGGCACC--UGCaca-UGCGCAgGCCU- -5'
15926 3' -57 NC_004065.1 + 152284 0.71 0.756543
Target:  5'- cACACCGUGGuCGUGgcguUGCGCaggcggaacGUCgGGAu -3'
miRNA:   3'- -UGUGGCACCuGCAC----AUGCG---------CAGgCCU- -5'
15926 3' -57 NC_004065.1 + 107003 0.71 0.728722
Target:  5'- aGCGCCGUcGGACGUc-ACGCucgCCGGAg -3'
miRNA:   3'- -UGUGGCA-CCUGCAcaUGCGca-GGCCU- -5'
15926 3' -57 NC_004065.1 + 162650 0.73 0.651764
Target:  5'- gGCGCCcagccuaGGCGUGUcuagacucgaccGCGCGUCCGGAg -3'
miRNA:   3'- -UGUGGcac----CUGCACA------------UGCGCAGGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.