Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15926 | 3' | -57 | NC_004065.1 | + | 141163 | 0.66 | 0.948804 |
Target: 5'- gGCAcCCG-GGACGUGUuucaGUUCGGAc -3' miRNA: 3'- -UGU-GGCaCCUGCACAugcgCAGGCCU- -5' |
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15926 | 3' | -57 | NC_004065.1 | + | 29497 | 0.66 | 0.944656 |
Target: 5'- uCGCCaUGGACGcccUGUGCGCGgcgaUCCGa- -3' miRNA: 3'- uGUGGcACCUGC---ACAUGCGC----AGGCcu -5' |
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15926 | 3' | -57 | NC_004065.1 | + | 119628 | 0.66 | 0.940295 |
Target: 5'- gACGCCGUcGGcCGUG-GCGUGUUCGa- -3' miRNA: 3'- -UGUGGCA-CCuGCACaUGCGCAGGCcu -5' |
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15926 | 3' | -57 | NC_004065.1 | + | 90084 | 0.66 | 0.935717 |
Target: 5'- uGCGCgCGUGaGuGCGUGUACcCGUCCGu- -3' miRNA: 3'- -UGUG-GCAC-C-UGCACAUGcGCAGGCcu -5' |
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15926 | 3' | -57 | NC_004065.1 | + | 185469 | 0.66 | 0.95274 |
Target: 5'- ----gGUGGugGUgGUGCGgGUCgGGAg -3' miRNA: 3'- uguggCACCugCA-CAUGCgCAGgCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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