miRNA: 3'- -UGUGGCaCCUGCaCAUgCGCAGG------CCU- -5'
miRNA: 3'- uguggCACCugCA-CAUGCgCAGgCCU- -5'
miRNA: 3'- -UGugGC-ACCugCAcauGCGCAGGCCU- -5'
miRNA: 3'- ugUGGCA------------CCUGCaCAUGCGCag--GCCU- -5'
miRNA: 3'- -UGUGGCAccuGCACa---UGCGCAGGCCU- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15926 | 3' | -57 | NC_004065.1 | + | 176491 | 0.7 | 0.80927 |
|
Target: 5'- gGCACCG-GGACG-GUGgGUGUCCugucucGGAc -3' miRNA: 3'- -UGUGGCaCCUGCaCAUgCGCAGG------CCU- -5' |
|||||||
| 15926 | 3' | -57 | NC_004065.1 | + | 185469 | 0.66 | 0.95274 |
|
Target: 5'- ----gGUGGugGUgGUGCGgGUCgGGAg -3' miRNA: 3'- uguggCACCugCA-CAUGCgCAGgCCU- -5' |
|||||||
| 15926 | 3' | -57 | NC_004065.1 | + | 186394 | 0.68 | 0.884784 |
|
Target: 5'- gGCugCGuUGGugGUu--CGUGUCUGGAa -3' miRNA: 3'- -UGugGC-ACCugCAcauGCGCAGGCCU- -5' |
|||||||
| 15926 | 3' | -57 | NC_004065.1 | + | 208862 | 0.67 | 0.930923 |
|
Target: 5'- -aGCCGUucgagacggagaGGACG-GUGCGCGgugaCGGAc -3' miRNA: 3'- ugUGGCA------------CCUGCaCAUGCGCag--GCCU- -5' |
|||||||
| 15926 | 3' | -57 | NC_004065.1 | + | 223976 | 0.67 | 0.930923 |
|
Target: 5'- uACACCGUc--UGUGagcaACGUGUCCGGAc -3' miRNA: 3'- -UGUGGCAccuGCACa---UGCGCAGGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home