Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15927 | 3' | -57.9 | NC_004065.1 | + | 43604 | 0.66 | 0.915997 |
Target: 5'- ---aUG-GUCCCGgugaGGCCCAUCAAGAg -3' miRNA: 3'- gcagGCgCAGGGC----UCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 188576 | 0.66 | 0.915997 |
Target: 5'- aGUCU-CGUCCCG-GCCCAaaAGGAc -3' miRNA: 3'- gCAGGcGCAGGGCuCGGGUagUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 195540 | 0.66 | 0.915997 |
Target: 5'- gGUUgGCGUUgCGGGCuCCGUcCGGGAUa -3' miRNA: 3'- gCAGgCGCAGgGCUCG-GGUA-GUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 87725 | 0.66 | 0.910318 |
Target: 5'- gGUCCcgauGCGUCCCaaAGUCCGUCAAa-- -3' miRNA: 3'- gCAGG----CGCAGGGc-UCGGGUAGUUcua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 60914 | 0.66 | 0.898307 |
Target: 5'- uGgCCGCGgCCCGcGUCUGUCAGGAc -3' miRNA: 3'- gCaGGCGCaGGGCuCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 50820 | 0.66 | 0.898307 |
Target: 5'- -uUCCuCGUCCaCGGGCCCGaaGAGAa -3' miRNA: 3'- gcAGGcGCAGG-GCUCGGGUagUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 131775 | 0.67 | 0.878694 |
Target: 5'- aGggCCGcCGUCCCGAGCCguCGUCGGc-- -3' miRNA: 3'- gCa-GGC-GCAGGGCUCGG--GUAGUUcua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 133504 | 0.67 | 0.878694 |
Target: 5'- aCGUCCGCuacggUCCGAGUCgGUCGccgAGAUg -3' miRNA: 3'- -GCAGGCGca---GGGCUCGGgUAGU---UCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 110190 | 0.67 | 0.871744 |
Target: 5'- gCGgCCGCGacgCgCCGccGCCCGUCGAGAg -3' miRNA: 3'- -GCaGGCGCa--G-GGCu-CGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 220896 | 0.67 | 0.871744 |
Target: 5'- gGUCCGUGUCUCGGuGCUCgAUCGcGAUc -3' miRNA: 3'- gCAGGCGCAGGGCU-CGGG-UAGUuCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 214854 | 0.67 | 0.857253 |
Target: 5'- uGUCCGCGUCCCacAGCgUAUCGu--- -3' miRNA: 3'- gCAGGCGCAGGGc-UCGgGUAGUucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 152190 | 0.67 | 0.857253 |
Target: 5'- aCG-CCGCGUCCgGAGaCCUGguuccgCAAGAa -3' miRNA: 3'- -GCaGGCGCAGGgCUC-GGGUa-----GUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 158716 | 0.67 | 0.855013 |
Target: 5'- gGUCUGCGcgCCCGAcgugcgaccagcgcGgCCAUCGGGAg -3' miRNA: 3'- gCAGGCGCa-GGGCU--------------CgGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 88858 | 0.67 | 0.849723 |
Target: 5'- uGUCCGaacugaaacaCGUCCCGGguGCCCAUgGAGc- -3' miRNA: 3'- gCAGGC----------GCAGGGCU--CGGGUAgUUCua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 202746 | 0.68 | 0.834119 |
Target: 5'- --cUCGUGUCCCGAGCgCCGUCc-GAa -3' miRNA: 3'- gcaGGCGCAGGGCUCG-GGUAGuuCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 88791 | 0.68 | 0.826059 |
Target: 5'- aGUCCuGCGUgCCCaugGAGCCCGUguUGAGGUg -3' miRNA: 3'- gCAGG-CGCA-GGG---CUCGGGUA--GUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 150887 | 0.68 | 0.817836 |
Target: 5'- gGUCCaGCGa--CGAGUCCGUCGGGAa -3' miRNA: 3'- gCAGG-CGCaggGCUCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 59939 | 0.68 | 0.817836 |
Target: 5'- --aUCGCGuUCCCgGAGCCCAUCAc--- -3' miRNA: 3'- gcaGGCGC-AGGG-CUCGGGUAGUucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 30603 | 0.68 | 0.808611 |
Target: 5'- uCGUCCGCGUUCCGAggcagcgacgcguGUCCGUCc---- -3' miRNA: 3'- -GCAGGCGCAGGGCU-------------CGGGUAGuucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 161285 | 0.69 | 0.79226 |
Target: 5'- uGUCCGaGUCCggcagCGAcCCCGUCAGGAUg -3' miRNA: 3'- gCAGGCgCAGG-----GCUcGGGUAGUUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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