Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15927 | 3' | -57.9 | NC_004065.1 | + | 4896 | 1.05 | 0.005527 |
Target: 5'- gCGUCCGCGUCCCGAGCCCAUCAAGAUc -3' miRNA: 3'- -GCAGGCGCAGGGCUCGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 60186 | 0.8 | 0.241114 |
Target: 5'- cCGU-CGCGguUCCCGAGCCCGUUAAGAUc -3' miRNA: 3'- -GCAgGCGC--AGGGCUCGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 135399 | 0.75 | 0.433529 |
Target: 5'- cCGgCCGCG-CCCGAcCCCGUCAGGAg -3' miRNA: 3'- -GCaGGCGCaGGGCUcGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 174607 | 0.72 | 0.591714 |
Target: 5'- --cCCGCGcCCCGgacAGCCCAUCAGGc- -3' miRNA: 3'- gcaGGCGCaGGGC---UCGGGUAGUUCua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 36954 | 0.72 | 0.591714 |
Target: 5'- cCGaUCCGUGUCUCGAGaccaUCAUCGAGAc -3' miRNA: 3'- -GC-AGGCGCAGGGCUCg---GGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 133724 | 0.72 | 0.591714 |
Target: 5'- -uUUCGUcUCCCGAGUCCAUCGGGGa -3' miRNA: 3'- gcAGGCGcAGGGCUCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 32286 | 0.7 | 0.696639 |
Target: 5'- uGUCCGCGUCCUcggucuccucgucgGAGCCCgacgaauccuuGUcCGAGAUg -3' miRNA: 3'- gCAGGCGCAGGG--------------CUCGGG-----------UA-GUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 50350 | 0.7 | 0.736776 |
Target: 5'- cCG-CCGCGaUCCCGAGCCCccccgcuGUCAuccuGAc -3' miRNA: 3'- -GCaGGCGC-AGGGCUCGGG-------UAGUu---CUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 179147 | 0.69 | 0.747066 |
Target: 5'- cCGUCCuCG-CCCGuGCCCGUCGAu-- -3' miRNA: 3'- -GCAGGcGCaGGGCuCGGGUAGUUcua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 40828 | 0.69 | 0.756325 |
Target: 5'- uCGgCCGCGUCCCuGAcguuGUCCAUCAGGc- -3' miRNA: 3'- -GCaGGCGCAGGG-CU----CGGGUAGUUCua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 197335 | 0.69 | 0.756325 |
Target: 5'- gCGuUCCGCGUCCCGAagGCgCugcgCGAGAa -3' miRNA: 3'- -GC-AGGCGCAGGGCU--CGgGua--GUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 161285 | 0.69 | 0.79226 |
Target: 5'- uGUCCGaGUCCggcagCGAcCCCGUCAGGAUg -3' miRNA: 3'- gCAGGCgCAGG-----GCUcGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 30603 | 0.68 | 0.808611 |
Target: 5'- uCGUCCGCGUUCCGAggcagcgacgcguGUCCGUCc---- -3' miRNA: 3'- -GCAGGCGCAGGGCU-------------CGGGUAGuucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 150887 | 0.68 | 0.817836 |
Target: 5'- gGUCCaGCGa--CGAGUCCGUCGGGAa -3' miRNA: 3'- gCAGG-CGCaggGCUCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 59939 | 0.68 | 0.817836 |
Target: 5'- --aUCGCGuUCCCgGAGCCCAUCAc--- -3' miRNA: 3'- gcaGGCGC-AGGG-CUCGGGUAGUucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 88791 | 0.68 | 0.826059 |
Target: 5'- aGUCCuGCGUgCCCaugGAGCCCGUguUGAGGUg -3' miRNA: 3'- gCAGG-CGCA-GGG---CUCGGGUA--GUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 202746 | 0.68 | 0.834119 |
Target: 5'- --cUCGUGUCCCGAGCgCCGUCc-GAa -3' miRNA: 3'- gcaGGCGCAGGGCUCG-GGUAGuuCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 88858 | 0.67 | 0.849723 |
Target: 5'- uGUCCGaacugaaacaCGUCCCGGguGCCCAUgGAGc- -3' miRNA: 3'- gCAGGC----------GCAGGGCU--CGGGUAgUUCua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 158716 | 0.67 | 0.855013 |
Target: 5'- gGUCUGCGcgCCCGAcgugcgaccagcgcGgCCAUCGGGAg -3' miRNA: 3'- gCAGGCGCa-GGGCU--------------CgGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 214854 | 0.67 | 0.857253 |
Target: 5'- uGUCCGCGUCCCacAGCgUAUCGu--- -3' miRNA: 3'- gCAGGCGCAGGGc-UCGgGUAGUucua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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