miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15927 3' -57.9 NC_004065.1 + 40828 0.69 0.756325
Target:  5'- uCGgCCGCGUCCCuGAcguuGUCCAUCAGGc- -3'
miRNA:   3'- -GCaGGCGCAGGG-CU----CGGGUAGUUCua -5'
15927 3' -57.9 NC_004065.1 + 197335 0.69 0.756325
Target:  5'- gCGuUCCGCGUCCCGAagGCgCugcgCGAGAa -3'
miRNA:   3'- -GC-AGGCGCAGGGCU--CGgGua--GUUCUa -5'
15927 3' -57.9 NC_004065.1 + 179147 0.69 0.747066
Target:  5'- cCGUCCuCG-CCCGuGCCCGUCGAu-- -3'
miRNA:   3'- -GCAGGcGCaGGGCuCGGGUAGUUcua -5'
15927 3' -57.9 NC_004065.1 + 50350 0.7 0.736776
Target:  5'- cCG-CCGCGaUCCCGAGCCCccccgcuGUCAuccuGAc -3'
miRNA:   3'- -GCaGGCGC-AGGGCUCGGG-------UAGUu---CUa -5'
15927 3' -57.9 NC_004065.1 + 32286 0.7 0.696639
Target:  5'- uGUCCGCGUCCUcggucuccucgucgGAGCCCgacgaauccuuGUcCGAGAUg -3'
miRNA:   3'- gCAGGCGCAGGG--------------CUCGGG-----------UA-GUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 174607 0.72 0.591714
Target:  5'- --cCCGCGcCCCGgacAGCCCAUCAGGc- -3'
miRNA:   3'- gcaGGCGCaGGGC---UCGGGUAGUUCua -5'
15927 3' -57.9 NC_004065.1 + 36954 0.72 0.591714
Target:  5'- cCGaUCCGUGUCUCGAGaccaUCAUCGAGAc -3'
miRNA:   3'- -GC-AGGCGCAGGGCUCg---GGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 133724 0.72 0.591714
Target:  5'- -uUUCGUcUCCCGAGUCCAUCGGGGa -3'
miRNA:   3'- gcAGGCGcAGGGCUCGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 135399 0.75 0.433529
Target:  5'- cCGgCCGCG-CCCGAcCCCGUCAGGAg -3'
miRNA:   3'- -GCaGGCGCaGGGCUcGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 60186 0.8 0.241114
Target:  5'- cCGU-CGCGguUCCCGAGCCCGUUAAGAUc -3'
miRNA:   3'- -GCAgGCGC--AGGGCUCGGGUAGUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 4896 1.05 0.005527
Target:  5'- gCGUCCGCGUCCCGAGCCCAUCAAGAUc -3'
miRNA:   3'- -GCAGGCGCAGGGCUCGGGUAGUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.