miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15927 3' -57.9 NC_004065.1 + 152190 0.67 0.857253
Target:  5'- aCG-CCGCGUCCgGAGaCCUGguuccgCAAGAa -3'
miRNA:   3'- -GCaGGCGCAGGgCUC-GGGUa-----GUUCUa -5'
15927 3' -57.9 NC_004065.1 + 158716 0.67 0.855013
Target:  5'- gGUCUGCGcgCCCGAcgugcgaccagcgcGgCCAUCGGGAg -3'
miRNA:   3'- gCAGGCGCa-GGGCU--------------CgGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 161285 0.69 0.79226
Target:  5'- uGUCCGaGUCCggcagCGAcCCCGUCAGGAUg -3'
miRNA:   3'- gCAGGCgCAGG-----GCUcGGGUAGUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 174607 0.72 0.591714
Target:  5'- --cCCGCGcCCCGgacAGCCCAUCAGGc- -3'
miRNA:   3'- gcaGGCGCaGGGC---UCGGGUAGUUCua -5'
15927 3' -57.9 NC_004065.1 + 179147 0.69 0.747066
Target:  5'- cCGUCCuCG-CCCGuGCCCGUCGAu-- -3'
miRNA:   3'- -GCAGGcGCaGGGCuCGGGUAGUUcua -5'
15927 3' -57.9 NC_004065.1 + 188576 0.66 0.915997
Target:  5'- aGUCU-CGUCCCG-GCCCAaaAGGAc -3'
miRNA:   3'- gCAGGcGCAGGGCuCGGGUagUUCUa -5'
15927 3' -57.9 NC_004065.1 + 195540 0.66 0.915997
Target:  5'- gGUUgGCGUUgCGGGCuCCGUcCGGGAUa -3'
miRNA:   3'- gCAGgCGCAGgGCUCG-GGUA-GUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 197335 0.69 0.756325
Target:  5'- gCGuUCCGCGUCCCGAagGCgCugcgCGAGAa -3'
miRNA:   3'- -GC-AGGCGCAGGGCU--CGgGua--GUUCUa -5'
15927 3' -57.9 NC_004065.1 + 202746 0.68 0.834119
Target:  5'- --cUCGUGUCCCGAGCgCCGUCc-GAa -3'
miRNA:   3'- gcaGGCGCAGGGCUCG-GGUAGuuCUa -5'
15927 3' -57.9 NC_004065.1 + 214854 0.67 0.857253
Target:  5'- uGUCCGCGUCCCacAGCgUAUCGu--- -3'
miRNA:   3'- gCAGGCGCAGGGc-UCGgGUAGUucua -5'
15927 3' -57.9 NC_004065.1 + 220896 0.67 0.871744
Target:  5'- gGUCCGUGUCUCGGuGCUCgAUCGcGAUc -3'
miRNA:   3'- gCAGGCGCAGGGCU-CGGG-UAGUuCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.