miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15927 3' -57.9 NC_004065.1 + 135399 0.75 0.433529
Target:  5'- cCGgCCGCG-CCCGAcCCCGUCAGGAg -3'
miRNA:   3'- -GCaGGCGCaGGGCUcGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 87725 0.66 0.910318
Target:  5'- gGUCCcgauGCGUCCCaaAGUCCGUCAAa-- -3'
miRNA:   3'- gCAGG----CGCAGGGc-UCGGGUAGUUcua -5'
15927 3' -57.9 NC_004065.1 + 50820 0.66 0.898307
Target:  5'- -uUCCuCGUCCaCGGGCCCGaaGAGAa -3'
miRNA:   3'- gcAGGcGCAGG-GCUCGGGUagUUCUa -5'
15927 3' -57.9 NC_004065.1 + 133504 0.67 0.878694
Target:  5'- aCGUCCGCuacggUCCGAGUCgGUCGccgAGAUg -3'
miRNA:   3'- -GCAGGCGca---GGGCUCGGgUAGU---UCUA- -5'
15927 3' -57.9 NC_004065.1 + 110190 0.67 0.871744
Target:  5'- gCGgCCGCGacgCgCCGccGCCCGUCGAGAg -3'
miRNA:   3'- -GCaGGCGCa--G-GGCu-CGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 214854 0.67 0.857253
Target:  5'- uGUCCGCGUCCCacAGCgUAUCGu--- -3'
miRNA:   3'- gCAGGCGCAGGGc-UCGgGUAGUucua -5'
15927 3' -57.9 NC_004065.1 + 152190 0.67 0.857253
Target:  5'- aCG-CCGCGUCCgGAGaCCUGguuccgCAAGAa -3'
miRNA:   3'- -GCaGGCGCAGGgCUC-GGGUa-----GUUCUa -5'
15927 3' -57.9 NC_004065.1 + 158716 0.67 0.855013
Target:  5'- gGUCUGCGcgCCCGAcgugcgaccagcgcGgCCAUCGGGAg -3'
miRNA:   3'- gCAGGCGCa-GGGCU--------------CgGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 88858 0.67 0.849723
Target:  5'- uGUCCGaacugaaacaCGUCCCGGguGCCCAUgGAGc- -3'
miRNA:   3'- gCAGGC----------GCAGGGCU--CGGGUAgUUCua -5'
15927 3' -57.9 NC_004065.1 + 202746 0.68 0.834119
Target:  5'- --cUCGUGUCCCGAGCgCCGUCc-GAa -3'
miRNA:   3'- gcaGGCGCAGGGCUCG-GGUAGuuCUa -5'
15927 3' -57.9 NC_004065.1 + 88791 0.68 0.826059
Target:  5'- aGUCCuGCGUgCCCaugGAGCCCGUguUGAGGUg -3'
miRNA:   3'- gCAGG-CGCA-GGG---CUCGGGUA--GUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 133724 0.72 0.591714
Target:  5'- -uUUCGUcUCCCGAGUCCAUCGGGGa -3'
miRNA:   3'- gcAGGCGcAGGGCUCGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 36954 0.72 0.591714
Target:  5'- cCGaUCCGUGUCUCGAGaccaUCAUCGAGAc -3'
miRNA:   3'- -GC-AGGCGCAGGGCUCg---GGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 32286 0.7 0.696639
Target:  5'- uGUCCGCGUCCUcggucuccucgucgGAGCCCgacgaauccuuGUcCGAGAUg -3'
miRNA:   3'- gCAGGCGCAGGG--------------CUCGGG-----------UA-GUUCUA- -5'
15927 3' -57.9 NC_004065.1 + 50350 0.7 0.736776
Target:  5'- cCG-CCGCGaUCCCGAGCCCccccgcuGUCAuccuGAc -3'
miRNA:   3'- -GCaGGCGC-AGGGCUCGGG-------UAGUu---CUa -5'
15927 3' -57.9 NC_004065.1 + 40828 0.69 0.756325
Target:  5'- uCGgCCGCGUCCCuGAcguuGUCCAUCAGGc- -3'
miRNA:   3'- -GCaGGCGCAGGG-CU----CGGGUAGUUCua -5'
15927 3' -57.9 NC_004065.1 + 30603 0.68 0.808611
Target:  5'- uCGUCCGCGUUCCGAggcagcgacgcguGUCCGUCc---- -3'
miRNA:   3'- -GCAGGCGCAGGGCU-------------CGGGUAGuucua -5'
15927 3' -57.9 NC_004065.1 + 150887 0.68 0.817836
Target:  5'- gGUCCaGCGa--CGAGUCCGUCGGGAa -3'
miRNA:   3'- gCAGG-CGCaggGCUCGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 43604 0.66 0.915997
Target:  5'- ---aUG-GUCCCGgugaGGCCCAUCAAGAg -3'
miRNA:   3'- gcagGCgCAGGGC----UCGGGUAGUUCUa -5'
15927 3' -57.9 NC_004065.1 + 60186 0.8 0.241114
Target:  5'- cCGU-CGCGguUCCCGAGCCCGUUAAGAUc -3'
miRNA:   3'- -GCAgGCGC--AGGGCUCGGGUAGUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.