Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15927 | 3' | -57.9 | NC_004065.1 | + | 60914 | 0.66 | 0.898307 |
Target: 5'- uGgCCGCGgCCCGcGUCUGUCAGGAc -3' miRNA: 3'- gCaGGCGCaGGGCuCGGGUAGUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 131775 | 0.67 | 0.878694 |
Target: 5'- aGggCCGcCGUCCCGAGCCguCGUCGGc-- -3' miRNA: 3'- gCa-GGC-GCAGGGCUCGG--GUAGUUcua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 220896 | 0.67 | 0.871744 |
Target: 5'- gGUCCGUGUCUCGGuGCUCgAUCGcGAUc -3' miRNA: 3'- gCAGGCGCAGGGCU-CGGG-UAGUuCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 59939 | 0.68 | 0.817836 |
Target: 5'- --aUCGCGuUCCCgGAGCCCAUCAc--- -3' miRNA: 3'- gcaGGCGC-AGGG-CUCGGGUAGUucua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 161285 | 0.69 | 0.79226 |
Target: 5'- uGUCCGaGUCCggcagCGAcCCCGUCAGGAUg -3' miRNA: 3'- gCAGGCgCAGG-----GCUcGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 197335 | 0.69 | 0.756325 |
Target: 5'- gCGuUCCGCGUCCCGAagGCgCugcgCGAGAa -3' miRNA: 3'- -GC-AGGCGCAGGGCU--CGgGua--GUUCUa -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 179147 | 0.69 | 0.747066 |
Target: 5'- cCGUCCuCG-CCCGuGCCCGUCGAu-- -3' miRNA: 3'- -GCAGGcGCaGGGCuCGGGUAGUUcua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 174607 | 0.72 | 0.591714 |
Target: 5'- --cCCGCGcCCCGgacAGCCCAUCAGGc- -3' miRNA: 3'- gcaGGCGCaGGGC---UCGGGUAGUUCua -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 60186 | 0.8 | 0.241114 |
Target: 5'- cCGU-CGCGguUCCCGAGCCCGUUAAGAUc -3' miRNA: 3'- -GCAgGCGC--AGGGCUCGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 4896 | 1.05 | 0.005527 |
Target: 5'- gCGUCCGCGUCCCGAGCCCAUCAAGAUc -3' miRNA: 3'- -GCAGGCGCAGGGCUCGGGUAGUUCUA- -5' |
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15927 | 3' | -57.9 | NC_004065.1 | + | 43604 | 0.66 | 0.915997 |
Target: 5'- ---aUG-GUCCCGgugaGGCCCAUCAAGAg -3' miRNA: 3'- gcagGCgCAGGGC----UCGGGUAGUUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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