miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 41488 0.66 0.500404
Target:  5'- uGCGCCGGgGCgUCgggacggggaGCgCGCGGGCGg- -3'
miRNA:   3'- -CGCGGUCgCGgGGg---------CG-GCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 202268 0.66 0.500404
Target:  5'- gGCG-CAGCGUCUCgaugCGCgGCGGG-GUCa -3'
miRNA:   3'- -CGCgGUCGCGGGG----GCGgCGCCCgCAG- -5'
15928 3' -68.2 NC_004065.1 + 76679 0.66 0.500404
Target:  5'- cGCGUCGGCGCCgCCGUCcccgaagaaGCGuucgaagaGcGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGgGGCGG---------CGC--------C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 92518 0.66 0.500404
Target:  5'- gGC-CCGGUGCCUCgCGCgCGCguacGGGCGg- -3'
miRNA:   3'- -CGcGGUCGCGGGG-GCG-GCG----CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 107770 0.66 0.499538
Target:  5'- -gGCCGGCgggggguuaggacGCCgCCCggauacuugGCCGUGGGCGa- -3'
miRNA:   3'- cgCGGUCG-------------CGG-GGG---------CGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163908 0.66 0.491772
Target:  5'- cGCGCCAGCGCCUCggugaUGUCGCcccccaGcGCGUg -3'
miRNA:   3'- -CGCGGUCGCGGGG-----GCGGCGc-----C-CGCAg -5'
15928 3' -68.2 NC_004065.1 + 199533 0.66 0.491772
Target:  5'- cGCGCagccgGGCGCCUCCaGCCG-GGcGCGcCc -3'
miRNA:   3'- -CGCGg----UCGCGGGGG-CGGCgCC-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 116011 0.66 0.491772
Target:  5'- uGCGCCgcgggGGCaGCuCUCUGCCGaCGGGUcUCg -3'
miRNA:   3'- -CGCGG-----UCG-CG-GGGGCGGC-GCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 229153 0.66 0.491772
Target:  5'- aUGCCggcggGGCGCCCUCGCC-C-GGCaGUCa -3'
miRNA:   3'- cGCGG-----UCGCGGGGGCGGcGcCCG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 169331 0.66 0.491772
Target:  5'- gGCG-CAGCGCCaucaccguCUCGCCcugGUGGGcCGUCu -3'
miRNA:   3'- -CGCgGUCGCGG--------GGGCGG---CGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 90604 0.66 0.490912
Target:  5'- aGCGUccuugagCAGCGCaCuCUCGCugcgCGCGGGcCGUCg -3'
miRNA:   3'- -CGCG-------GUCGCG-G-GGGCG----GCGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 67585 0.66 0.490912
Target:  5'- aGCGCaGGgGCCUCgGCUcgagauaGCGcGGCGUCc -3'
miRNA:   3'- -CGCGgUCgCGGGGgCGG-------CGC-CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 123767 0.66 0.490053
Target:  5'- uGCGCC-GCGCgCCgGUCGCcugucggacccaGGCGUCc -3'
miRNA:   3'- -CGCGGuCGCGgGGgCGGCGc-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 229644 0.66 0.489195
Target:  5'- uGCGCCA---UCCCgGCCggcggcaguggcagGUGGGCGUCg -3'
miRNA:   3'- -CGCGGUcgcGGGGgCGG--------------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 147873 0.66 0.486626
Target:  5'- gGUGCCucgccaggagguacAGCGUCCgCGCCGCcggauacgucagccGGGCG-Ca -3'
miRNA:   3'- -CGCGG--------------UCGCGGGgGCGGCG--------------CCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 67752 0.66 0.486626
Target:  5'- gGCGCC-GCGUCCgacggcgugacgaaCGgCGCGGGCGcCc -3'
miRNA:   3'- -CGCGGuCGCGGGg-------------GCgGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 168818 0.66 0.483209
Target:  5'- uCGCCAuCaucCCCUCGCCGCGGGUc-- -3'
miRNA:   3'- cGCGGUcGc--GGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 110144 0.66 0.483209
Target:  5'- cGCGCCGGCaaGUUCUCGCUcaGGGaCGUCu -3'
miRNA:   3'- -CGCGGUCG--CGGGGGCGGcgCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 133992 0.66 0.483209
Target:  5'- gGgGCCcGUGCCCaCGCaCGCGGGgG-Cg -3'
miRNA:   3'- -CgCGGuCGCGGGgGCG-GCGCCCgCaG- -5'
15928 3' -68.2 NC_004065.1 + 146716 0.66 0.482357
Target:  5'- aCGCC-GCGCUcgacgacgagagcUCCGUCGCccacaucuauguGGGCGUCg -3'
miRNA:   3'- cGCGGuCGCGG-------------GGGCGGCG------------CCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.