miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 202268 0.66 0.500404
Target:  5'- gGCG-CAGCGUCUCgaugCGCgGCGGG-GUCa -3'
miRNA:   3'- -CGCgGUCGCGGGG----GCGgCGCCCgCAG- -5'
15928 3' -68.2 NC_004065.1 + 74635 0.66 0.461291
Target:  5'- cCGCCAcCGCUaCCCGggucugagguccggaCCGCGGcGCGUCc -3'
miRNA:   3'- cGCGGUcGCGG-GGGC---------------GGCGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 229644 0.66 0.489195
Target:  5'- uGCGCCA---UCCCgGCCggcggcaguggcagGUGGGCGUCg -3'
miRNA:   3'- -CGCGGUcgcGGGGgCGG--------------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 141642 0.66 0.457966
Target:  5'- cGCGCCAGCugGCCUacaCCGCCaccuuGCuGGGCa-- -3'
miRNA:   3'- -CGCGGUCG--CGGG---GGCGG-----CG-CCCGcag -5'
15928 3' -68.2 NC_004065.1 + 229153 0.66 0.491772
Target:  5'- aUGCCggcggGGCGCCCUCGCC-C-GGCaGUCa -3'
miRNA:   3'- cGCGG-----UCGCGGGGGCGGcGcCCG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 37214 0.66 0.474718
Target:  5'- aGCG-CAGCGCCCagaCGCCGC---CGUCu -3'
miRNA:   3'- -CGCgGUCGCGGGg--GCGGCGcccGCAG- -5'
15928 3' -68.2 NC_004065.1 + 122475 0.66 0.466303
Target:  5'- gGCGUCccgguAGCGCacgaCCCGCaGCuGGGCGgUCg -3'
miRNA:   3'- -CGCGG-----UCGCGg---GGGCGgCG-CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 110144 0.66 0.483209
Target:  5'- cGCGCCGGCaaGUUCUCGCUcaGGGaCGUCu -3'
miRNA:   3'- -CGCGGUCG--CGGGGGCGGcgCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 146716 0.66 0.482357
Target:  5'- aCGCC-GCGCUcgacgacgagagcUCCGUCGCccacaucuauguGGGCGUCg -3'
miRNA:   3'- cGCGGuCGCGG-------------GGGCGGCG------------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 61853 0.66 0.474718
Target:  5'- cGCGCCGcugucGCGCCCCgcgcgaagggccUGCUGaCGGGaaugacCGUCa -3'
miRNA:   3'- -CGCGGU-----CGCGGGG------------GCGGC-GCCC------GCAG- -5'
15928 3' -68.2 NC_004065.1 + 199533 0.66 0.491772
Target:  5'- cGCGCagccgGGCGCCUCCaGCCG-GGcGCGcCc -3'
miRNA:   3'- -CGCGg----UCGCGGGGG-CGGCgCC-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 133992 0.66 0.483209
Target:  5'- gGgGCCcGUGCCCaCGCaCGCGGGgG-Cg -3'
miRNA:   3'- -CgCGGuCGCGGGgGCG-GCGCCCgCaG- -5'
15928 3' -68.2 NC_004065.1 + 123767 0.66 0.490053
Target:  5'- uGCGCC-GCGCgCCgGUCGCcugucggacccaGGCGUCc -3'
miRNA:   3'- -CGCGGuCGCGgGGgCGGCGc-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 197798 0.66 0.46463
Target:  5'- cGCGuuggucaCCAGCGCCCgCGgCGCcacguugGGGuCGUCc -3'
miRNA:   3'- -CGC-------GGUCGCGGGgGCgGCG-------CCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 124791 0.66 0.474718
Target:  5'- uGCGCCAccaucuccuCGUCCgaCGuCCGcCGGGCGUCc -3'
miRNA:   3'- -CGCGGUc--------GCGGGg-GC-GGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 96664 0.66 0.463794
Target:  5'- gGCGUCGGCGggCUCGCCcgacggaggaucguGCGGGCGa- -3'
miRNA:   3'- -CGCGGUCGCggGGGCGG--------------CGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 116011 0.66 0.491772
Target:  5'- uGCGCCgcgggGGCaGCuCUCUGCCGaCGGGUcUCg -3'
miRNA:   3'- -CGCGG-----UCG-CG-GGGGCGGC-GCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 67752 0.66 0.486626
Target:  5'- gGCGCC-GCGUCCgacggcgugacgaaCGgCGCGGGCGcCc -3'
miRNA:   3'- -CGCGGuCGCGGGg-------------GCgGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 66130 0.66 0.466303
Target:  5'- gGCGCUGGCGCgCUgGgCCGCGGaccgGCGcCa -3'
miRNA:   3'- -CGCGGUCGCGgGGgC-GGCGCC----CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 17686 0.66 0.466303
Target:  5'- cCGUC-GCGCCaUCGCCGUGGcCGUCg -3'
miRNA:   3'- cGCGGuCGCGGgGGCGGCGCCcGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.