miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 28944 0.67 0.449709
Target:  5'- -aGCCGcCGCCUCCGUCGCcggaggcgGGGCGc- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCG--------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 78347 0.67 0.409706
Target:  5'- gGCGCCGcGCGCUggcgguagagCUCGCUGUcguugaGGGCGUUg -3'
miRNA:   3'- -CGCGGU-CGCGG----------GGGCGGCG------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 132379 0.67 0.401974
Target:  5'- cGCGaacaaaCCGGCGUCUCCguGCCGCaaGGGCGg- -3'
miRNA:   3'- -CGC------GGUCGCGGGGG--CGGCG--CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 182697 0.67 0.432642
Target:  5'- -gGCCAuccguuGC-CCCCCGCCGCggaucggccucacGGGCGa- -3'
miRNA:   3'- cgCGGU------CGcGGGGGCGGCG-------------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163502 0.67 0.433446
Target:  5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 111931 0.67 0.433446
Target:  5'- aCGCCaugGGCGCCgCCGUCGC-GGUGg- -3'
miRNA:   3'- cGCGG---UCGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 213170 0.67 0.436671
Target:  5'- -gGCU--CGCCCUCGCCGUGcgugcgcagaacugcGGCGUCa -3'
miRNA:   3'- cgCGGucGCGGGGGCGGCGC---------------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 102066 0.67 0.431036
Target:  5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3'
miRNA:   3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 152016 0.67 0.420684
Target:  5'- cGCGCuCAGCucgaacggcuccuccGUCCCggggcggcuCGCCGCGGccaGCGUCu -3'
miRNA:   3'- -CGCG-GUCG---------------CGGGG---------GCGGCGCC---CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 147392 0.67 0.406602
Target:  5'- gGCGCagaGGUucGCCCCCGgacgcaaCCGCGuccagcagcacgacGGCGUCa -3'
miRNA:   3'- -CGCGg--UCG--CGGGGGC-------GGCGC--------------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 76773 0.67 0.401974
Target:  5'- uCGuCCGGCGCaUCgCCGCCGCGacGGCGa- -3'
miRNA:   3'- cGC-GGUCGCG-GG-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 49671 0.67 0.401974
Target:  5'- cGUGgCGGUGCCgCCGgaGCaGGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGGgGGCggCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 87169 0.67 0.433446
Target:  5'- uCGuCCAGgaGCCCCUGCacCGCGcGGuCGUCg -3'
miRNA:   3'- cGC-GGUCg-CGGGGGCG--GCGC-CC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 11892 0.67 0.441535
Target:  5'- aGCuGuCUAGUGUCUUCGCCcggaaaGUGGGCGUCu -3'
miRNA:   3'- -CG-C-GGUCGCGGGGGCGG------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 95804 0.67 0.449709
Target:  5'- gGCGCCAcGCaGCCCCCggggaaaacggaGCCGUaGGUGa- -3'
miRNA:   3'- -CGCGGU-CG-CGGGGG------------CGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 205176 0.67 0.449709
Target:  5'- cCGCCGuCGCCgCCaacaucgggCGCCGCGuGCGUCu -3'
miRNA:   3'- cGCGGUcGCGG-GG---------GCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 209134 0.67 0.449709
Target:  5'- -aGCgAGCGgauuCCCCagCGCCGCGGccGUGUCg -3'
miRNA:   3'- cgCGgUCGC----GGGG--GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 159495 0.67 0.449709
Target:  5'- cGCGCCugcaggcGCGCCUgcagcuCCGUCGagaaGGGCGcCg -3'
miRNA:   3'- -CGCGGu------CGCGGG------GGCGGCg---CCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 163387 0.67 0.425443
Target:  5'- aGCGUCAGCGCgUCCGCCaCGcaGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGgGGGCGGcGCc-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 149881 0.67 0.425443
Target:  5'- uCGUCAGcCGCCUCUGCCGCgccaGGGaCGa- -3'
miRNA:   3'- cGCGGUC-GCGGGGGCGGCG----CCC-GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.