Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 4646 | 1.09 | 0.000458 |
Target: 5'- aGCGCCAGCGCCCCCGCCGCGGGCGUCc -3' miRNA: 3'- -CGCGGUCGCGGGGGCGGCGCCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 97549 | 0.77 | 0.094045 |
Target: 5'- aGCGCCAGCGCCUgCUGCaGCGGGUGc- -3' miRNA: 3'- -CGCGGUCGCGGG-GGCGgCGCCCGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 32935 | 0.77 | 0.094045 |
Target: 5'- -gGCCGGUcgGCUCCCGCgcggaUGCGGGCGUCg -3' miRNA: 3'- cgCGGUCG--CGGGGGCG-----GCGCCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 146173 | 0.77 | 0.100986 |
Target: 5'- aUGCuCAGCgaGCCCuCCGCCGUGGGCGcCa -3' miRNA: 3'- cGCG-GUCG--CGGG-GGCGGCGCCCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 145756 | 0.76 | 0.119101 |
Target: 5'- uGCGCCGaucgcgucGCGCgCCgGUCGCGGGCGcUCg -3' miRNA: 3'- -CGCGGU--------CGCGgGGgCGGCGCCCGC-AG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 159660 | 0.76 | 0.108408 |
Target: 5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3' miRNA: 3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 29168 | 0.75 | 0.126866 |
Target: 5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3' miRNA: 3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 63874 | 0.75 | 0.133847 |
Target: 5'- aCGUCGGCGCCgCUGCCGCcGGCGcCg -3' miRNA: 3'- cGCGGUCGCGGgGGCGGCGcCCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 171402 | 0.75 | 0.130769 |
Target: 5'- cGCGagaCCGGCGaCUCCGCCGCGcGCGUCg -3' miRNA: 3'- -CGC---GGUCGCgGGGGCGGCGCcCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 86764 | 0.75 | 0.121924 |
Target: 5'- -aGCUGcCGCCCCCGCCGCGGGUc-- -3' miRNA: 3'- cgCGGUcGCGGGGGCGGCGCCCGcag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 92091 | 0.75 | 0.124809 |
Target: 5'- uGCGCCAGCaGCUCCgaGCC-CGGcGCGUCa -3' miRNA: 3'- -CGCGGUCG-CGGGGg-CGGcGCC-CGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 128610 | 0.75 | 0.140204 |
Target: 5'- cGCGCCAGcCGCCCCCacgGUCGuuGGCGg- -3' miRNA: 3'- -CGCGGUC-GCGGGGG---CGGCgcCCGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 62602 | 0.75 | 0.124809 |
Target: 5'- aGCGCCGcCGCCCCCGCCgGCGGcagcagccGCGg- -3' miRNA: 3'- -CGCGGUcGCGGGGGCGG-CGCC--------CGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 127978 | 0.74 | 0.150258 |
Target: 5'- gGCGCUAaCGCCCggCCGCCGCGGGUc-- -3' miRNA: 3'- -CGCGGUcGCGGG--GGCGGCGCCCGcag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 101577 | 0.74 | 0.166192 |
Target: 5'- cGCGCCcgcGGaCGCCUCCGCCGCGcucagacucgguggcGGCGcCg -3' miRNA: 3'- -CGCGG---UC-GCGGGGGCGGCGC---------------CCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 106439 | 0.74 | 0.160964 |
Target: 5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3' miRNA: 3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 125135 | 0.74 | 0.143485 |
Target: 5'- cGCGCCGuCGCCCa-GCCGCGuGGCGaUCa -3' miRNA: 3'- -CGCGGUcGCGGGggCGGCGC-CCGC-AG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 66772 | 0.74 | 0.155171 |
Target: 5'- gGCGCCGGCGCCgCCGCUGCgccgacgaaacaugaGcGGaCGUCc -3' miRNA: 3'- -CGCGGUCGCGGgGGCGGCG---------------C-CC-GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 107529 | 0.73 | 0.176306 |
Target: 5'- uGCGCgCGGCGaCCgCCCaGCUGCGGGuCGUg -3' miRNA: 3'- -CGCG-GUCGC-GG-GGG-CGGCGCCC-GCAg -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 130734 | 0.73 | 0.172353 |
Target: 5'- gGgGCUAuGUGCCCCuCGUCGUGGGCGa- -3' miRNA: 3'- -CgCGGU-CGCGGGG-GCGGCGCCCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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