miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 135636 0.69 0.343572
Target:  5'- gGCGCCAccaGCCgacagCUCGCCGCGGccguaacgcGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGG-----GGGCGGCGCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 201151 0.69 0.342882
Target:  5'- gGCGCCAGCaGUCCUcgucacgcagcagCGCCgacaccaaGCGGcGCGUCc -3'
miRNA:   3'- -CGCGGUCG-CGGGG-------------GCGG--------CGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 125426 0.69 0.316747
Target:  5'- -gGCCGGCGCCagCGCCuCGGGCa-- -3'
miRNA:   3'- cgCGGUCGCGGggGCGGcGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 99850 0.69 0.316747
Target:  5'- aGCGUCuGCGCCCCgauCGCCGCcGuGCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGG---GCGGCGcC-CGCag -5'
15928 3' -68.2 NC_004065.1 + 195086 0.69 0.303939
Target:  5'- aGCGCgCGGCGCagaCCC-CCaG-GGGCGUCa -3'
miRNA:   3'- -CGCG-GUCGCGg--GGGcGG-CgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 104609 0.69 0.323303
Target:  5'- gGCGCUGGCGCCggCCGacuuccacgacCUGCGGGCGa- -3'
miRNA:   3'- -CGCGGUCGCGGg-GGC-----------GGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 188068 0.69 0.316748
Target:  5'- aGCGCCAGCGUcgagaaCCCgGCCGUGcacgacGCGUa -3'
miRNA:   3'- -CGCGGUCGCG------GGGgCGGCGCc-----CGCAg -5'
15928 3' -68.2 NC_004065.1 + 198377 0.69 0.303939
Target:  5'- -gGUCGGCGUCaaCGCCGUGGGCcagGUCu -3'
miRNA:   3'- cgCGGUCGCGGggGCGGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 87682 0.69 0.336715
Target:  5'- cUGaCGGUGCUCUCGCCGCcGGCGUUc -3'
miRNA:   3'- cGCgGUCGCGGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 187367 0.69 0.336035
Target:  5'- cGCGUCAGCGUCCCgaucuuugccagcUGgCGCGcggcgcgguguGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGGG-------------GCgGCGC-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 119808 0.69 0.308376
Target:  5'- cCGCCGGCgaaGCCCUCuucccucucgacggGCgGCGGcGCGUCg -3'
miRNA:   3'- cGCGGUCG---CGGGGG--------------CGgCGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 138653 0.69 0.316748
Target:  5'- -aGCUAGguauCGCCCCCGCCGaguacacgGGGCacGUCg -3'
miRNA:   3'- cgCGGUC----GCGGGGGCGGCg-------CCCG--CAG- -5'
15928 3' -68.2 NC_004065.1 + 58682 0.69 0.316748
Target:  5'- aCGCuagucaCAGCGCCgUCGCUcCGGGUGUCa -3'
miRNA:   3'- cGCG------GUCGCGGgGGCGGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 67007 0.68 0.386793
Target:  5'- gGCGCCcGUGUacgggCCCCG-CGCGGGCa-- -3'
miRNA:   3'- -CGCGGuCGCG-----GGGGCgGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 1181 0.68 0.386793
Target:  5'- uCGUCGGCGCCgCUGCCG-GGGUa-- -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCgCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 45803 0.68 0.371994
Target:  5'- gGgGCUGGCGCCacacgCCGCgUGCGGGUGg- -3'
miRNA:   3'- -CgCGGUCGCGGg----GGCG-GCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 36853 0.68 0.374922
Target:  5'- aGCGCCAGaaacagaacgcgcauCGCCgCCCaGCaGCaGGCGUCc -3'
miRNA:   3'- -CGCGGUC---------------GCGG-GGG-CGgCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 24977 0.68 0.386793
Target:  5'- uGgGUgGGCGUCCCUcgGCCuuuuguguGUGGGCGUCc -3'
miRNA:   3'- -CgCGgUCGCGGGGG--CGG--------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 118325 0.68 0.357585
Target:  5'- uCGCCAGCGggaCCGCCGaCGuccauGGCGUCg -3'
miRNA:   3'- cGCGGUCGCgggGGCGGC-GC-----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 123554 0.68 0.371994
Target:  5'- aGCGCC-GCGUCCUCGUCGUacGGGuCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGGGCGGCG--CCC-GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.