miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 67007 0.68 0.386793
Target:  5'- gGCGCCcGUGUacgggCCCCG-CGCGGGCa-- -3'
miRNA:   3'- -CGCGGuCGCG-----GGGGCgGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 1181 0.68 0.386793
Target:  5'- uCGUCGGCGCCgCUGCCG-GGGUa-- -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCgCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 24977 0.68 0.386793
Target:  5'- uGgGUgGGCGUCCCUcgGCCuuuuguguGUGGGCGUCc -3'
miRNA:   3'- -CgCGgUCGCGGGGG--CGG--------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 36853 0.68 0.374922
Target:  5'- aGCGCCAGaaacagaacgcgcauCGCCgCCCaGCaGCaGGCGUCc -3'
miRNA:   3'- -CGCGGUC---------------GCGG-GGG-CGgCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 45803 0.68 0.371994
Target:  5'- gGgGCUGGCGCCacacgCCGCgUGCGGGUGg- -3'
miRNA:   3'- -CgCGGUCGCGGg----GGCG-GCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 142209 0.68 0.36474
Target:  5'- aGCGuguuuCCAGCGUCCCCGUgugCGCGuugcgccuGGCGUa -3'
miRNA:   3'- -CGC-----GGUCGCGGGGGCG---GCGC--------CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 200765 0.68 0.357585
Target:  5'- cGCGUCGGuCGCUcuCUCGUCGCGcGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGG--GGGCGGCGC-CCGCag -5'
15928 3' -68.2 NC_004065.1 + 118325 0.68 0.357585
Target:  5'- uCGCCAGCGggaCCGCCGaCGuccauGGCGUCg -3'
miRNA:   3'- cGCGGUCGCgggGGCGGC-GC-----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 159913 0.68 0.357585
Target:  5'- gGCGCCGcCGCCgCCGCUGCcGGUGc- -3'
miRNA:   3'- -CGCGGUcGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 112623 0.68 0.350528
Target:  5'- cGCGCCGcgaGCCCagCGCgCGCGGccgaGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGGGg-GCG-GCGCC----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 184039 0.68 0.350528
Target:  5'- cCGCCacGGCGCCCagguCGCCGUuacacacGGCGUCc -3'
miRNA:   3'- cGCGG--UCGCGGGg---GCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 129429 0.68 0.350528
Target:  5'- -aGCUGuGCGCCUCggaccgguacgUGCCGCGGGCGg- -3'
miRNA:   3'- cgCGGU-CGCGGGG-----------GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 43369 0.68 0.350528
Target:  5'- cUGCUgguggAGCGCCuuCCCGCCGagaugGGGCGUg -3'
miRNA:   3'- cGCGG-----UCGCGG--GGGCGGCg----CCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 152921 0.67 0.433446
Target:  5'- uCGgCGGCGCUgCCGCCGCGG-Ca-- -3'
miRNA:   3'- cGCgGUCGCGGgGGCGGCGCCcGcag -5'
15928 3' -68.2 NC_004065.1 + 78660 0.67 0.409706
Target:  5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3'
miRNA:   3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5'
15928 3' -68.2 NC_004065.1 + 224780 0.67 0.441535
Target:  5'- uGCaaCAGCGCCaCCUGa-GCGGGCGg- -3'
miRNA:   3'- -CGcgGUCGCGG-GGGCggCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 225929 0.67 0.425443
Target:  5'- cCGCUucccGuCGUCuCCCGCgGCGGGUGUUg -3'
miRNA:   3'- cGCGGu---C-GCGG-GGGCGgCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 68236 0.67 0.425443
Target:  5'- cGCGUCGGCGgUgacgaggacggaCCgGCUGCuGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCgG------------GGgCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 124635 0.67 0.425443
Target:  5'- -gGUCAGCGCCUCC-UCGCcGGcCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGGcGGCGcCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 224521 0.67 0.417529
Target:  5'- aUGCCAgGCGCUggauCgUGCUGCGGGCGa- -3'
miRNA:   3'- cGCGGU-CGCGG----GgGCGGCGCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.