miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 4646 1.09 0.000458
Target:  5'- aGCGCCAGCGCCCCCGCCGCGGGCGUCc -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 97549 0.77 0.094045
Target:  5'- aGCGCCAGCGCCUgCUGCaGCGGGUGc- -3'
miRNA:   3'- -CGCGGUCGCGGG-GGCGgCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 32935 0.77 0.094045
Target:  5'- -gGCCGGUcgGCUCCCGCgcggaUGCGGGCGUCg -3'
miRNA:   3'- cgCGGUCG--CGGGGGCG-----GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 146173 0.77 0.100986
Target:  5'- aUGCuCAGCgaGCCCuCCGCCGUGGGCGcCa -3'
miRNA:   3'- cGCG-GUCG--CGGG-GGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 159660 0.76 0.108408
Target:  5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 145756 0.76 0.119101
Target:  5'- uGCGCCGaucgcgucGCGCgCCgGUCGCGGGCGcUCg -3'
miRNA:   3'- -CGCGGU--------CGCGgGGgCGGCGCCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 86764 0.75 0.121924
Target:  5'- -aGCUGcCGCCCCCGCCGCGGGUc-- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 92091 0.75 0.124809
Target:  5'- uGCGCCAGCaGCUCCgaGCC-CGGcGCGUCa -3'
miRNA:   3'- -CGCGGUCG-CGGGGg-CGGcGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 62602 0.75 0.124809
Target:  5'- aGCGCCGcCGCCCCCGCCgGCGGcagcagccGCGg- -3'
miRNA:   3'- -CGCGGUcGCGGGGGCGG-CGCC--------CGCag -5'
15928 3' -68.2 NC_004065.1 + 29168 0.75 0.126866
Target:  5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3'
miRNA:   3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 171402 0.75 0.130769
Target:  5'- cGCGagaCCGGCGaCUCCGCCGCGcGCGUCg -3'
miRNA:   3'- -CGC---GGUCGCgGGGGCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 63874 0.75 0.133847
Target:  5'- aCGUCGGCGCCgCUGCCGCcGGCGcCg -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCGcCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 128610 0.75 0.140204
Target:  5'- cGCGCCAGcCGCCCCCacgGUCGuuGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGGGGG---CGGCgcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 125135 0.74 0.143485
Target:  5'- cGCGCCGuCGCCCa-GCCGCGuGGCGaUCa -3'
miRNA:   3'- -CGCGGUcGCGGGggCGGCGC-CCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 127978 0.74 0.150258
Target:  5'- gGCGCUAaCGCCCggCCGCCGCGGGUc-- -3'
miRNA:   3'- -CGCGGUcGCGGG--GGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 66772 0.74 0.155171
Target:  5'- gGCGCCGGCGCCgCCGCUGCgccgacgaaacaugaGcGGaCGUCc -3'
miRNA:   3'- -CGCGGUCGCGGgGGCGGCG---------------C-CC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 106439 0.74 0.160964
Target:  5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 101577 0.74 0.166192
Target:  5'- cGCGCCcgcGGaCGCCUCCGCCGCGcucagacucgguggcGGCGcCg -3'
miRNA:   3'- -CGCGG---UC-GCGGGGGCGGCGC---------------CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 130734 0.73 0.172353
Target:  5'- gGgGCUAuGUGCCCCuCGUCGUGGGCGa- -3'
miRNA:   3'- -CgCGGU-CGCGGGG-GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 107529 0.73 0.176306
Target:  5'- uGCGCgCGGCGaCCgCCCaGCUGCGGGuCGUg -3'
miRNA:   3'- -CGCG-GUCGC-GG-GGG-CGGCGCCC-GCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.