miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 746 0.73 0.188653
Target:  5'- cGCGaCCAGCGUgCCgCGUCGCGGGU-UCg -3'
miRNA:   3'- -CGC-GGUCGCGgGG-GCGGCGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 103469 0.73 0.192935
Target:  5'- uGCGCCAcGCGCCCCCGUgcuuCGUGuuGCGUa -3'
miRNA:   3'- -CGCGGU-CGCGGGGGCG----GCGCc-CGCAg -5'
15928 3' -68.2 NC_004065.1 + 99540 0.72 0.200409
Target:  5'- -gGUCGGCGCUCCCgucucGCCGCGGcggacggccgugguGCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGG-----CGGCGCC--------------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 168621 0.72 0.201754
Target:  5'- gGCuGCUGGCGCUggUGCCGCGGGCGg- -3'
miRNA:   3'- -CG-CGGUCGCGGggGCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 32887 0.72 0.206294
Target:  5'- cGCGCCGGCgaGCgUCUGCCGCuGGGCaUCc -3'
miRNA:   3'- -CGCGGUCG--CGgGGGCGGCG-CCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 86904 0.72 0.206294
Target:  5'- gGCGCCGGUcucGCCCUCgGCgGCGcGcGCGUCg -3'
miRNA:   3'- -CGCGGUCG---CGGGGG-CGgCGC-C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 130071 0.72 0.209989
Target:  5'- gGCGUuucgcagCAGCaGCCgCCGCCGCGgcgguccGGCGUCa -3'
miRNA:   3'- -CGCG-------GUCG-CGGgGGCGGCGC-------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 77724 0.72 0.210922
Target:  5'- cCGCCGGCaccGCCgCCGCCGCaggacuGGGCGa- -3'
miRNA:   3'- cGCGGUCG---CGGgGGCGGCG------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 52550 0.72 0.215639
Target:  5'- cCGCCGuGCGCCCCCGCCGa--GCG-Ca -3'
miRNA:   3'- cGCGGU-CGCGGGGGCGGCgccCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 199890 0.72 0.220446
Target:  5'- aGCgGCCGGuCGCCCUCcCCGgGGGUGUg -3'
miRNA:   3'- -CG-CGGUC-GCGGGGGcGGCgCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 109772 0.71 0.22485
Target:  5'- cGCGCCggucagcagggcaGGCGCUa-CGCCGCGGGCa-- -3'
miRNA:   3'- -CGCGG-------------UCGCGGggGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 138224 0.71 0.225344
Target:  5'- cGCGCUcugcgaugucgaGGCGCUCgCCGCCGUcgaggagggucGGGUGUCc -3'
miRNA:   3'- -CGCGG------------UCGCGGG-GGCGGCG-----------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 66537 0.71 0.225344
Target:  5'- aGCGCCuGCGCUUCaaCCGCGcGGCGUg -3'
miRNA:   3'- -CGCGGuCGCGGGGgcGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 99968 0.71 0.230335
Target:  5'- cCGCCgcGGCGUgCUCggGCCGCGGGuCGUCg -3'
miRNA:   3'- cGCGG--UCGCGgGGG--CGGCGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 135828 0.71 0.230335
Target:  5'- gGCGUCGGCGaucuggcgaCCUCGUCGaUGGGUGUCg -3'
miRNA:   3'- -CGCGGUCGCg--------GGGGCGGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 110403 0.71 0.230335
Target:  5'- aCGCCacggccgacGGCGucuCCUCCGCCGCcGGCGUCc -3'
miRNA:   3'- cGCGG---------UCGC---GGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 101457 0.71 0.230335
Target:  5'- cCGCCGacGuCGCUgCCGCUGCGGGCG-Ca -3'
miRNA:   3'- cGCGGU--C-GCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 75871 0.71 0.235418
Target:  5'- cCGCCGcCGCCgCCGCCGCcaccgcccgGGGCGaUCg -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGCG---------CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 66726 0.71 0.235418
Target:  5'- -gGCUGGCGCCCgUGCCGuCGGaccccggcgGCGUCg -3'
miRNA:   3'- cgCGGUCGCGGGgGCGGC-GCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 162776 0.71 0.240073
Target:  5'- -gGCCGcgauaacGCGUgCCCCGugauacCCGCGGGCGUCu -3'
miRNA:   3'- cgCGGU-------CGCG-GGGGC------GGCGCCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.