miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 121700 0.71 0.245866
Target:  5'- aUGCCcccGuCGCCCCgcaCGCuUGCGGGCGUCa -3'
miRNA:   3'- cGCGGu--C-GCGGGG---GCG-GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 201365 0.71 0.251234
Target:  5'- uGCGCgAGCuGCgCCUCGCCGgGGGgugccaCGUCg -3'
miRNA:   3'- -CGCGgUCG-CG-GGGGCGGCgCCC------GCAG- -5'
15928 3' -68.2 NC_004065.1 + 124087 0.71 0.251234
Target:  5'- uGCGUCgAGCacCCCCCGCaCGCGguGGCGUUg -3'
miRNA:   3'- -CGCGG-UCGc-GGGGGCG-GCGC--CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 151360 0.71 0.251234
Target:  5'- gGCGCCgcGGCGCCggCCGCUGCGcuGGCGg- -3'
miRNA:   3'- -CGCGG--UCGCGGg-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 96851 0.71 0.251234
Target:  5'- aCGgC-GCGCUgUCGCCGCGGGCGcCg -3'
miRNA:   3'- cGCgGuCGCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 25472 0.71 0.256697
Target:  5'- aCGCgCAGCaCCuCCCGCCGCccgacgaGGCGUCu -3'
miRNA:   3'- cGCG-GUCGcGG-GGGCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 76376 0.71 0.256697
Target:  5'- cGCGCCGGCGCCgccgcggaugagCUCGCCGCcguccgaguGGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGG------------GGGCGGCGc--------CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 109864 0.7 0.262257
Target:  5'- gGUGCCgggcGGUGCCaCCggcguCGCCGCGGccGCGUCg -3'
miRNA:   3'- -CGCGG----UCGCGG-GG-----GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 201027 0.7 0.27367
Target:  5'- uGCGCgCGGCGCCUcgccaCCGCCGcCGGagacugauccGUGUCg -3'
miRNA:   3'- -CGCG-GUCGCGGG-----GGCGGC-GCC----------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 109620 0.7 0.27367
Target:  5'- cGgGCCgcGGUGCCCaccaCCGUCGaGGGCGUCc -3'
miRNA:   3'- -CgCGG--UCGCGGG----GGCGGCgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 125625 0.7 0.278935
Target:  5'- cGCGCCugguagaAGUGCacgagCCGCCGCGuGGCGUg -3'
miRNA:   3'- -CGCGG-------UCGCGgg---GGCGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 196551 0.7 0.279525
Target:  5'- gGCGCguaGGCGCCCaCgGCCGCGaacGCGUg -3'
miRNA:   3'- -CGCGg--UCGCGGG-GgCGGCGCc--CGCAg -5'
15928 3' -68.2 NC_004065.1 + 44267 0.7 0.285479
Target:  5'- uGUGCCAGaCGCCCCacaUGUGGGCccgGUCg -3'
miRNA:   3'- -CGCGGUC-GCGGGGgcgGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 102893 0.7 0.291532
Target:  5'- cCGCCgguAGCGCCgCCGCCGCgauGGGgGa- -3'
miRNA:   3'- cGCGG---UCGCGGgGGCGGCG---CCCgCag -5'
15928 3' -68.2 NC_004065.1 + 222656 0.7 0.291532
Target:  5'- cGCGUCAGCGCCCCaCGuCCGaCaGuaGUCc -3'
miRNA:   3'- -CGCGGUCGCGGGG-GC-GGC-GcCcgCAG- -5'
15928 3' -68.2 NC_004065.1 + 40482 0.7 0.291532
Target:  5'- cGCGCUGGgGUCCaggCCGCuCGCGGGCu-- -3'
miRNA:   3'- -CGCGGUCgCGGG---GGCG-GCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 126321 0.7 0.297685
Target:  5'- cCGCCAgGCGCuCCCCGCCGCccaccGUGUa -3'
miRNA:   3'- cGCGGU-CGCG-GGGGCGGCGcc---CGCAg -5'
15928 3' -68.2 NC_004065.1 + 155193 0.7 0.297685
Target:  5'- uGCGCCGccuCGgUCCCGaCC-CGGGCGUCu -3'
miRNA:   3'- -CGCGGUc--GCgGGGGC-GGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 198377 0.69 0.303939
Target:  5'- -gGUCGGCGUCaaCGCCGUGGGCcagGUCu -3'
miRNA:   3'- cgCGGUCGCGGggGCGGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 195086 0.69 0.303939
Target:  5'- aGCGCgCGGCGCagaCCC-CCaG-GGGCGUCa -3'
miRNA:   3'- -CGCG-GUCGCGg--GGGcGG-CgCCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.