miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 119808 0.69 0.308376
Target:  5'- cCGCCGGCgaaGCCCUCuucccucucgacggGCgGCGGcGCGUCg -3'
miRNA:   3'- cGCGGUCG---CGGGGG--------------CGgCGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 99850 0.69 0.316747
Target:  5'- aGCGUCuGCGCCCCgauCGCCGCcGuGCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGG---GCGGCGcC-CGCag -5'
15928 3' -68.2 NC_004065.1 + 125426 0.69 0.316747
Target:  5'- -gGCCGGCGCCagCGCCuCGGGCa-- -3'
miRNA:   3'- cgCGGUCGCGGggGCGGcGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 58682 0.69 0.316748
Target:  5'- aCGCuagucaCAGCGCCgUCGCUcCGGGUGUCa -3'
miRNA:   3'- cGCG------GUCGCGGgGGCGGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 138653 0.69 0.316748
Target:  5'- -aGCUAGguauCGCCCCCGCCGaguacacgGGGCacGUCg -3'
miRNA:   3'- cgCGGUC----GCGGGGGCGGCg-------CCCG--CAG- -5'
15928 3' -68.2 NC_004065.1 + 188068 0.69 0.316748
Target:  5'- aGCGCCAGCGUcgagaaCCCgGCCGUGcacgacGCGUa -3'
miRNA:   3'- -CGCGGUCGCG------GGGgCGGCGCc-----CGCAg -5'
15928 3' -68.2 NC_004065.1 + 104609 0.69 0.323303
Target:  5'- gGCGCUGGCGCCggCCGacuuccacgacCUGCGGGCGa- -3'
miRNA:   3'- -CGCGGUCGCGGg-GGC-----------GGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 187367 0.69 0.336035
Target:  5'- cGCGUCAGCGUCCCgaucuuugccagcUGgCGCGcggcgcgguguGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGGG-------------GCgGCGC-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 87682 0.69 0.336715
Target:  5'- cUGaCGGUGCUCUCGCCGCcGGCGUUc -3'
miRNA:   3'- cGCgGUCGCGGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 33481 0.69 0.336715
Target:  5'- cCGUgGGCGCCUacgCGCCgGCaGGCGUCu -3'
miRNA:   3'- cGCGgUCGCGGGg--GCGG-CGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 201151 0.69 0.342882
Target:  5'- gGCGCCAGCaGUCCUcgucacgcagcagCGCCgacaccaaGCGGcGCGUCc -3'
miRNA:   3'- -CGCGGUCG-CGGGG-------------GCGG--------CGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 135636 0.69 0.343572
Target:  5'- gGCGCCAccaGCCgacagCUCGCCGCGGccguaacgcGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGG-----GGGCGGCGCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 223529 0.69 0.343572
Target:  5'- aGUGCCGGcCGCgaCCCGaCCGUGGGU-UCg -3'
miRNA:   3'- -CGCGGUC-GCGg-GGGC-GGCGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 184039 0.68 0.350528
Target:  5'- cCGCCacGGCGCCCagguCGCCGUuacacacGGCGUCc -3'
miRNA:   3'- cGCGG--UCGCGGGg---GCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 43369 0.68 0.350528
Target:  5'- cUGCUgguggAGCGCCuuCCCGCCGagaugGGGCGUg -3'
miRNA:   3'- cGCGG-----UCGCGG--GGGCGGCg----CCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 129429 0.68 0.350528
Target:  5'- -aGCUGuGCGCCUCggaccgguacgUGCCGCGGGCGg- -3'
miRNA:   3'- cgCGGU-CGCGGGG-----------GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 112623 0.68 0.350528
Target:  5'- cGCGCCGcgaGCCCagCGCgCGCGGccgaGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGGGg-GCG-GCGCC----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 118325 0.68 0.357585
Target:  5'- uCGCCAGCGggaCCGCCGaCGuccauGGCGUCg -3'
miRNA:   3'- cGCGGUCGCgggGGCGGC-GC-----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 200765 0.68 0.357585
Target:  5'- cGCGUCGGuCGCUcuCUCGUCGCGcGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGG--GGGCGGCGC-CCGCag -5'
15928 3' -68.2 NC_004065.1 + 70287 0.68 0.357585
Target:  5'- uGUGCCAGCugacugGCCCCUGguaucaucuCCGUGGuCGUCg -3'
miRNA:   3'- -CGCGGUCG------CGGGGGC---------GGCGCCcGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.