miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 118325 0.68 0.357585
Target:  5'- uCGCCAGCGggaCCGCCGaCGuccauGGCGUCg -3'
miRNA:   3'- cGCGGUCGCgggGGCGGC-GC-----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 200765 0.68 0.357585
Target:  5'- cGCGUCGGuCGCUcuCUCGUCGCGcGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGG--GGGCGGCGC-CCGCag -5'
15928 3' -68.2 NC_004065.1 + 142209 0.68 0.36474
Target:  5'- aGCGuguuuCCAGCGUCCCCGUgugCGCGuugcgccuGGCGUa -3'
miRNA:   3'- -CGC-----GGUCGCGGGGGCG---GCGC--------CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 79621 0.68 0.36474
Target:  5'- cCGCUGcGCGCgCggaCGCUGCGGGCGUg -3'
miRNA:   3'- cGCGGU-CGCGgGg--GCGGCGCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 123554 0.68 0.371994
Target:  5'- aGCGCC-GCGUCCUCGUCGUacGGGuCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGGGCGGCG--CCC-GCag -5'
15928 3' -68.2 NC_004065.1 + 153286 0.68 0.371994
Target:  5'- cCGCCGGCGCcgcgcccguCCCCGCCGaGGaGUG-Ca -3'
miRNA:   3'- cGCGGUCGCG---------GGGGCGGCgCC-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 45803 0.68 0.371994
Target:  5'- gGgGCUGGCGCCacacgCCGCgUGCGGGUGg- -3'
miRNA:   3'- -CgCGGUCGCGGg----GGCG-GCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 173309 0.68 0.371994
Target:  5'- uGCuGCCGcCGCCgCCGCCGCuGcGGCGg- -3'
miRNA:   3'- -CG-CGGUcGCGGgGGCGGCG-C-CCGCag -5'
15928 3' -68.2 NC_004065.1 + 36853 0.68 0.374922
Target:  5'- aGCGCCAGaaacagaacgcgcauCGCCgCCCaGCaGCaGGCGUCc -3'
miRNA:   3'- -CGCGGUC---------------GCGG-GGG-CGgCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 94359 0.68 0.386044
Target:  5'- uGCGCgAGC-CCCCCgacgcgcguuacgGCCGCGGcgaGCuGUCg -3'
miRNA:   3'- -CGCGgUCGcGGGGG-------------CGGCGCC---CG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 67007 0.68 0.386793
Target:  5'- gGCGCCcGUGUacgggCCCCG-CGCGGGCa-- -3'
miRNA:   3'- -CGCGGuCGCG-----GGGGCgGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 24977 0.68 0.386793
Target:  5'- uGgGUgGGCGUCCCUcgGCCuuuuguguGUGGGCGUCc -3'
miRNA:   3'- -CgCGgUCGCGGGGG--CGG--------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 1181 0.68 0.386793
Target:  5'- uCGUCGGCGCCgCUGCCG-GGGUa-- -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCgCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 76773 0.67 0.401974
Target:  5'- uCGuCCGGCGCaUCgCCGCCGCGacGGCGa- -3'
miRNA:   3'- cGC-GGUCGCG-GG-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 49671 0.67 0.401974
Target:  5'- cGUGgCGGUGCCgCCGgaGCaGGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGGgGGCggCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 132379 0.67 0.401974
Target:  5'- cGCGaacaaaCCGGCGUCUCCguGCCGCaaGGGCGg- -3'
miRNA:   3'- -CGC------GGUCGCGGGGG--CGGCG--CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 147392 0.67 0.406602
Target:  5'- gGCGCagaGGUucGCCCCCGgacgcaaCCGCGuccagcagcacgacGGCGUCa -3'
miRNA:   3'- -CGCGg--UCG--CGGGGGC-------GGCGC--------------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 193844 0.67 0.409706
Target:  5'- uUGCUGcGCGCCCCC-CCGCGaGCGg- -3'
miRNA:   3'- cGCGGU-CGCGGGGGcGGCGCcCGCag -5'
15928 3' -68.2 NC_004065.1 + 128422 0.67 0.409706
Target:  5'- gGCGgCGGCGCCgCCaccgagucugagCGCgGCGGagGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGG-GG------------GCGgCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 78660 0.67 0.409706
Target:  5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3'
miRNA:   3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.