Results 101 - 120 of 179 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 102429 | 0.67 | 0.409706 |
Target: 5'- -aGCCGGCGCCUCCccuCUGCGaccugaacGGCGUg -3' miRNA: 3'- cgCGGUCGCGGGGGc--GGCGC--------CCGCAg -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 128422 | 0.67 | 0.409706 |
Target: 5'- gGCGgCGGCGCCgCCaccgagucugagCGCgGCGGagGCGUCc -3' miRNA: 3'- -CGCgGUCGCGG-GG------------GCGgCGCC--CGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 78660 | 0.67 | 0.409706 |
Target: 5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3' miRNA: 3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 130661 | 0.67 | 0.417529 |
Target: 5'- -aGUCGGCGCCgUCGCUGCcaacgcucgucGGGCGa- -3' miRNA: 3'- cgCGGUCGCGGgGGCGGCG-----------CCCGCag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 184484 | 0.67 | 0.417529 |
Target: 5'- gGCGgCuGcCGCCgCCGCCGCGGcgccgggugGCGUa -3' miRNA: 3'- -CGCgGuC-GCGGgGGCGGCGCC---------CGCAg -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 224521 | 0.67 | 0.417529 |
Target: 5'- aUGCCAgGCGCUggauCgUGCUGCGGGCGa- -3' miRNA: 3'- cGCGGU-CGCGG----GgGCGGCGCCCGCag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 152016 | 0.67 | 0.420684 |
Target: 5'- cGCGCuCAGCucgaacggcuccuccGUCCCggggcggcuCGCCGCGGccaGCGUCu -3' miRNA: 3'- -CGCG-GUCG---------------CGGGG---------GCGGCGCC---CGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 169854 | 0.67 | 0.425443 |
Target: 5'- cGgGCCAGCGUCgaCCUGUgcaugGCGGGCGcCg -3' miRNA: 3'- -CgCGGUCGCGG--GGGCGg----CGCCCGCaG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 163387 | 0.67 | 0.425443 |
Target: 5'- aGCGUCAGCGCgUCCGCCaCGcaGCGcCg -3' miRNA: 3'- -CGCGGUCGCGgGGGCGGcGCc-CGCaG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 124635 | 0.67 | 0.425443 |
Target: 5'- -gGUCAGCGCCUCC-UCGCcGGcCGUCa -3' miRNA: 3'- cgCGGUCGCGGGGGcGGCGcCC-GCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 149881 | 0.67 | 0.425443 |
Target: 5'- uCGUCAGcCGCCUCUGCCGCgccaGGGaCGa- -3' miRNA: 3'- cGCGGUC-GCGGGGGCGGCG----CCC-GCag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 171879 | 0.67 | 0.425443 |
Target: 5'- cCGCCGGCGacgaUUUCGCCGCcuGCGUCg -3' miRNA: 3'- cGCGGUCGCg---GGGGCGGCGccCGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 68236 | 0.67 | 0.425443 |
Target: 5'- cGCGUCGGCGgUgacgaggacggaCCgGCUGCuGGCGUCg -3' miRNA: 3'- -CGCGGUCGCgG------------GGgCGGCGcCCGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 225929 | 0.67 | 0.425443 |
Target: 5'- cCGCUucccGuCGUCuCCCGCgGCGGGUGUUg -3' miRNA: 3'- cGCGGu---C-GCGG-GGGCGgCGCCCGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 102066 | 0.67 | 0.431036 |
Target: 5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3' miRNA: 3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 182697 | 0.67 | 0.432642 |
Target: 5'- -gGCCAuccguuGC-CCCCCGCCGCggaucggccucacGGGCGa- -3' miRNA: 3'- cgCGGU------CGcGGGGGCGGCG-------------CCCGCag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 152921 | 0.67 | 0.433446 |
Target: 5'- uCGgCGGCGCUgCCGCCGCGG-Ca-- -3' miRNA: 3'- cGCgGUCGCGGgGGCGGCGCCcGcag -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 163502 | 0.67 | 0.433446 |
Target: 5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3' miRNA: 3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 229478 | 0.67 | 0.433446 |
Target: 5'- cGgGCCgGGCGCCgCUCGUCGCGGaaGCuUCa -3' miRNA: 3'- -CgCGG-UCGCGG-GGGCGGCGCC--CGcAG- -5' |
|||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 87169 | 0.67 | 0.433446 |
Target: 5'- uCGuCCAGgaGCCCCUGCacCGCGcGGuCGUCg -3' miRNA: 3'- cGC-GGUCg-CGGGGGCG--GCGC-CC-GCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home