Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 37214 | 0.66 | 0.474718 |
Target: 5'- aGCG-CAGCGCCCagaCGCCGC---CGUCu -3' miRNA: 3'- -CGCgGUCGCGGGg--GCGGCGcccGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 61853 | 0.66 | 0.474718 |
Target: 5'- cGCGCCGcugucGCGCCCCgcgcgaagggccUGCUGaCGGGaaugacCGUCa -3' miRNA: 3'- -CGCGGU-----CGCGGGG------------GCGGC-GCCC------GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 124791 | 0.66 | 0.474718 |
Target: 5'- uGCGCCAccaucuccuCGUCCgaCGuCCGcCGGGCGUCc -3' miRNA: 3'- -CGCGGUc--------GCGGGg-GC-GGC-GCCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 186693 | 0.66 | 0.474718 |
Target: 5'- gGCGCguggGGCGUCCCCGCCG-GGccagaugacGaCGUCg -3' miRNA: 3'- -CGCGg---UCGCGGGGGCGGCgCC---------C-GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 66130 | 0.66 | 0.466303 |
Target: 5'- gGCGCUGGCGCgCUgGgCCGCGGaccgGCGcCa -3' miRNA: 3'- -CGCGGUCGCGgGGgC-GGCGCC----CGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 120186 | 0.66 | 0.466303 |
Target: 5'- uGCGCgauGGC-CCCCCGCCGCagcaggacGGCGa- -3' miRNA: 3'- -CGCGg--UCGcGGGGGCGGCGc-------CCGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 17686 | 0.66 | 0.466303 |
Target: 5'- cCGUC-GCGCCaUCGCCGUGGcCGUCg -3' miRNA: 3'- cGCGGuCGCGGgGGCGGCGCCcGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 28829 | 0.66 | 0.466303 |
Target: 5'- uCGCC-GCGCCgCCCgagccgggacgcGCCGCuuGGUGUCg -3' miRNA: 3'- cGCGGuCGCGG-GGG------------CGGCGc-CCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 170314 | 0.66 | 0.466303 |
Target: 5'- uCGCCGuGCGCCgCgGCCGCucGGCGcCc -3' miRNA: 3'- cGCGGU-CGCGGgGgCGGCGc-CCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 122475 | 0.66 | 0.466303 |
Target: 5'- gGCGUCccgguAGCGCacgaCCCGCaGCuGGGCGgUCg -3' miRNA: 3'- -CGCGG-----UCGCGg---GGGCGgCG-CCCGC-AG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 197798 | 0.66 | 0.46463 |
Target: 5'- cGCGuuggucaCCAGCGCCCgCGgCGCcacguugGGGuCGUCc -3' miRNA: 3'- -CGC-------GGUCGCGGGgGCgGCG-------CCC-GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 96664 | 0.66 | 0.463794 |
Target: 5'- gGCGUCGGCGggCUCGCCcgacggaggaucguGCGGGCGa- -3' miRNA: 3'- -CGCGGUCGCggGGGCGG--------------CGCCCGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 74635 | 0.66 | 0.461291 |
Target: 5'- cCGCCAcCGCUaCCCGggucugagguccggaCCGCGGcGCGUCc -3' miRNA: 3'- cGCGGUcGCGG-GGGC---------------GGCGCC-CGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 127636 | 0.66 | 0.457966 |
Target: 5'- cCGCUcGCGCUgCCGCUGC-GGCGcCg -3' miRNA: 3'- cGCGGuCGCGGgGGCGGCGcCCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 173908 | 0.66 | 0.457966 |
Target: 5'- -gGCgAGCGCCgCCGUCGUccGGGacgGUCa -3' miRNA: 3'- cgCGgUCGCGGgGGCGGCG--CCCg--CAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 109473 | 0.66 | 0.457966 |
Target: 5'- cCGCUcGCGCCgaCCGCCGCcGGCa-- -3' miRNA: 3'- cGCGGuCGCGGg-GGCGGCGcCCGcag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 160859 | 0.66 | 0.457966 |
Target: 5'- uCGCCuuCGCCUCCGCCuCGuccaGCGUCg -3' miRNA: 3'- cGCGGucGCGGGGGCGGcGCc---CGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 198629 | 0.66 | 0.457966 |
Target: 5'- uGCGCCAGgGUCCCgGCCGagaGGaucCGcCg -3' miRNA: 3'- -CGCGGUCgCGGGGgCGGCg--CCc--GCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 141642 | 0.66 | 0.457966 |
Target: 5'- cGCGCCAGCugGCCUacaCCGCCaccuuGCuGGGCa-- -3' miRNA: 3'- -CGCGGUCG--CGGG---GGCGG-----CG-CCCGcag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 161436 | 0.66 | 0.457137 |
Target: 5'- cGUGUCGGCGCUCuggaucgCCGCCGCc-GCGUUg -3' miRNA: 3'- -CGCGGUCGCGGG-------GGCGGCGccCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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