miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 95804 0.67 0.449709
Target:  5'- gGCGCCAcGCaGCCCCCggggaaaacggaGCCGUaGGUGa- -3'
miRNA:   3'- -CGCGGU-CG-CGGGGG------------CGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 209134 0.67 0.449709
Target:  5'- -aGCgAGCGgauuCCCCagCGCCGCGGccGUGUCg -3'
miRNA:   3'- cgCGgUCGC----GGGG--GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 103773 0.67 0.449709
Target:  5'- cGCGCUgGGCGgcucgaUCCCCGCa-CGGGCGUg -3'
miRNA:   3'- -CGCGG-UCGC------GGGGGCGgcGCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 205176 0.67 0.449709
Target:  5'- cCGCCGuCGCCgCCaacaucgggCGCCGCGuGCGUCu -3'
miRNA:   3'- cGCGGUcGCGG-GG---------GCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 194381 0.67 0.449709
Target:  5'- gGCgGCCGGUcuucGUCCCUguggggacagaGCgGCGGGCGUUc -3'
miRNA:   3'- -CG-CGGUCG----CGGGGG-----------CGgCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 28944 0.67 0.449709
Target:  5'- -aGCCGcCGCCUCCGUCGCcggaggcgGGGCGc- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCG--------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 159495 0.67 0.449709
Target:  5'- cGCGCCugcaggcGCGCCUgcagcuCCGUCGagaaGGGCGcCg -3'
miRNA:   3'- -CGCGGu------CGCGGG------GGCGGCg---CCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 130615 0.67 0.441535
Target:  5'- cCGCUcGgGCCCCUGCUGCGaGCG-Ca -3'
miRNA:   3'- cGCGGuCgCGGGGGCGGCGCcCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 198950 0.67 0.441535
Target:  5'- cCGCCcGUGgCCaCCaGCCGCGagaaGGCGUCu -3'
miRNA:   3'- cGCGGuCGCgGG-GG-CGGCGC----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 224780 0.67 0.441535
Target:  5'- uGCaaCAGCGCCaCCUGa-GCGGGCGg- -3'
miRNA:   3'- -CGcgGUCGCGG-GGGCggCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 229565 0.67 0.441535
Target:  5'- cGC-CCAGgGUCCCCggacguuacGCCGCgaGGGCGg- -3'
miRNA:   3'- -CGcGGUCgCGGGGG---------CGGCG--CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 32484 0.67 0.441535
Target:  5'- cGCGCCAGUGUCCCUugaCGaucucGGUGUCa -3'
miRNA:   3'- -CGCGGUCGCGGGGGcg-GCgc---CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 88418 0.67 0.441535
Target:  5'- cCGCCGGCagcggaGCCCgCCGCCGUc-GCGUUg -3'
miRNA:   3'- cGCGGUCG------CGGG-GGCGGCGccCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 98537 0.67 0.441535
Target:  5'- aCGUCGGgagaCGCCgCCCGUCGCGGcauCGUCc -3'
miRNA:   3'- cGCGGUC----GCGG-GGGCGGCGCCc--GCAG- -5'
15928 3' -68.2 NC_004065.1 + 97699 0.67 0.441535
Target:  5'- uCGCUGcCGCCgCCGCC-CGGGCuGUCc -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGcGCCCG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 549 0.67 0.441535
Target:  5'- uGUGCgAGCGCCCCCuGuUCGCGcaacggggcuGGCGg- -3'
miRNA:   3'- -CGCGgUCGCGGGGG-C-GGCGC----------CCGCag -5'
15928 3' -68.2 NC_004065.1 + 11892 0.67 0.441535
Target:  5'- aGCuGuCUAGUGUCUUCGCCcggaaaGUGGGCGUCu -3'
miRNA:   3'- -CG-C-GGUCGCGGGGGCGG------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 213170 0.67 0.436671
Target:  5'- -gGCU--CGCCCUCGCCGUGcgugcgcagaacugcGGCGUCa -3'
miRNA:   3'- cgCGGucGCGGGGGCGGCGC---------------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 111931 0.67 0.433446
Target:  5'- aCGCCaugGGCGCCgCCGUCGC-GGUGg- -3'
miRNA:   3'- cGCGG---UCGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 229478 0.67 0.433446
Target:  5'- cGgGCCgGGCGCCgCUCGUCGCGGaaGCuUCa -3'
miRNA:   3'- -CgCGG-UCGCGG-GGGCGGCGCC--CGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.