miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 152921 0.67 0.433446
Target:  5'- uCGgCGGCGCUgCCGCCGCGG-Ca-- -3'
miRNA:   3'- cGCgGUCGCGGgGGCGGCGCCcGcag -5'
15928 3' -68.2 NC_004065.1 + 87169 0.67 0.433446
Target:  5'- uCGuCCAGgaGCCCCUGCacCGCGcGGuCGUCg -3'
miRNA:   3'- cGC-GGUCg-CGGGGGCG--GCGC-CC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 163502 0.67 0.433446
Target:  5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 182697 0.67 0.432642
Target:  5'- -gGCCAuccguuGC-CCCCCGCCGCggaucggccucacGGGCGa- -3'
miRNA:   3'- cgCGGU------CGcGGGGGCGGCG-------------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 102066 0.67 0.431036
Target:  5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3'
miRNA:   3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 171879 0.67 0.425443
Target:  5'- cCGCCGGCGacgaUUUCGCCGCcuGCGUCg -3'
miRNA:   3'- cGCGGUCGCg---GGGGCGGCGccCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 169854 0.67 0.425443
Target:  5'- cGgGCCAGCGUCgaCCUGUgcaugGCGGGCGcCg -3'
miRNA:   3'- -CgCGGUCGCGG--GGGCGg----CGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 225929 0.67 0.425443
Target:  5'- cCGCUucccGuCGUCuCCCGCgGCGGGUGUUg -3'
miRNA:   3'- cGCGGu---C-GCGG-GGGCGgCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 163387 0.67 0.425443
Target:  5'- aGCGUCAGCGCgUCCGCCaCGcaGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGgGGGCGGcGCc-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 68236 0.67 0.425443
Target:  5'- cGCGUCGGCGgUgacgaggacggaCCgGCUGCuGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCgG------------GGgCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 124635 0.67 0.425443
Target:  5'- -gGUCAGCGCCUCC-UCGCcGGcCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGGcGGCGcCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 149881 0.67 0.425443
Target:  5'- uCGUCAGcCGCCUCUGCCGCgccaGGGaCGa- -3'
miRNA:   3'- cGCGGUC-GCGGGGGCGGCG----CCC-GCag -5'
15928 3' -68.2 NC_004065.1 + 152016 0.67 0.420684
Target:  5'- cGCGCuCAGCucgaacggcuccuccGUCCCggggcggcuCGCCGCGGccaGCGUCu -3'
miRNA:   3'- -CGCG-GUCG---------------CGGGG---------GCGGCGCC---CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 224521 0.67 0.417529
Target:  5'- aUGCCAgGCGCUggauCgUGCUGCGGGCGa- -3'
miRNA:   3'- cGCGGU-CGCGG----GgGCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 184484 0.67 0.417529
Target:  5'- gGCGgCuGcCGCCgCCGCCGCGGcgccgggugGCGUa -3'
miRNA:   3'- -CGCgGuC-GCGGgGGCGGCGCC---------CGCAg -5'
15928 3' -68.2 NC_004065.1 + 130661 0.67 0.417529
Target:  5'- -aGUCGGCGCCgUCGCUGCcaacgcucgucGGGCGa- -3'
miRNA:   3'- cgCGGUCGCGGgGGCGGCG-----------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163267 0.67 0.409706
Target:  5'- gGCGCCGGCGCCUCC-UCGCGauuccGGUa-- -3'
miRNA:   3'- -CGCGGUCGCGGGGGcGGCGC-----CCGcag -5'
15928 3' -68.2 NC_004065.1 + 193844 0.67 0.409706
Target:  5'- uUGCUGcGCGCCCCC-CCGCGaGCGg- -3'
miRNA:   3'- cGCGGU-CGCGGGGGcGGCGCcCGCag -5'
15928 3' -68.2 NC_004065.1 + 128422 0.67 0.409706
Target:  5'- gGCGgCGGCGCCgCCaccgagucugagCGCgGCGGagGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGG-GG------------GCGgCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 78660 0.67 0.409706
Target:  5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3'
miRNA:   3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.