miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 549 0.67 0.441535
Target:  5'- uGUGCgAGCGCCCCCuGuUCGCGcaacggggcuGGCGg- -3'
miRNA:   3'- -CGCGgUCGCGGGGG-C-GGCGC----------CCGCag -5'
15928 3' -68.2 NC_004065.1 + 746 0.73 0.188653
Target:  5'- cGCGaCCAGCGUgCCgCGUCGCGGGU-UCg -3'
miRNA:   3'- -CGC-GGUCGCGgGG-GCGGCGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 1181 0.68 0.386793
Target:  5'- uCGUCGGCGCCgCUGCCG-GGGUa-- -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCgCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 4646 1.09 0.000458
Target:  5'- aGCGCCAGCGCCCCCGCCGCGGGCGUCc -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 11892 0.67 0.441535
Target:  5'- aGCuGuCUAGUGUCUUCGCCcggaaaGUGGGCGUCu -3'
miRNA:   3'- -CG-C-GGUCGCGGGGGCGG------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 17686 0.66 0.466303
Target:  5'- cCGUC-GCGCCaUCGCCGUGGcCGUCg -3'
miRNA:   3'- cGCGGuCGCGGgGGCGGCGCCcGCAG- -5'
15928 3' -68.2 NC_004065.1 + 24977 0.68 0.386793
Target:  5'- uGgGUgGGCGUCCCUcgGCCuuuuguguGUGGGCGUCc -3'
miRNA:   3'- -CgCGgUCGCGGGGG--CGG--------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 25472 0.71 0.256697
Target:  5'- aCGCgCAGCaCCuCCCGCCGCccgacgaGGCGUCu -3'
miRNA:   3'- cGCG-GUCGcGG-GGGCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 28829 0.66 0.466303
Target:  5'- uCGCC-GCGCCgCCCgagccgggacgcGCCGCuuGGUGUCg -3'
miRNA:   3'- cGCGGuCGCGG-GGG------------CGGCGc-CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 28944 0.67 0.449709
Target:  5'- -aGCCGcCGCCUCCGUCGCcggaggcgGGGCGc- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCG--------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 29168 0.75 0.126866
Target:  5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3'
miRNA:   3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 32484 0.67 0.441535
Target:  5'- cGCGCCAGUGUCCCUugaCGaucucGGUGUCa -3'
miRNA:   3'- -CGCGGUCGCGGGGGcg-GCgc---CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 32887 0.72 0.206294
Target:  5'- cGCGCCGGCgaGCgUCUGCCGCuGGGCaUCc -3'
miRNA:   3'- -CGCGGUCG--CGgGGGCGGCG-CCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 32935 0.77 0.094045
Target:  5'- -gGCCGGUcgGCUCCCGCgcggaUGCGGGCGUCg -3'
miRNA:   3'- cgCGGUCG--CGGGGGCG-----GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 33481 0.69 0.336715
Target:  5'- cCGUgGGCGCCUacgCGCCgGCaGGCGUCu -3'
miRNA:   3'- cGCGgUCGCGGGg--GCGG-CGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 36853 0.68 0.374922
Target:  5'- aGCGCCAGaaacagaacgcgcauCGCCgCCCaGCaGCaGGCGUCc -3'
miRNA:   3'- -CGCGGUC---------------GCGG-GGG-CGgCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 37214 0.66 0.474718
Target:  5'- aGCG-CAGCGCCCagaCGCCGC---CGUCu -3'
miRNA:   3'- -CGCgGUCGCGGGg--GCGGCGcccGCAG- -5'
15928 3' -68.2 NC_004065.1 + 40482 0.7 0.291532
Target:  5'- cGCGCUGGgGUCCaggCCGCuCGCGGGCu-- -3'
miRNA:   3'- -CGCGGUCgCGGG---GGCG-GCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 41488 0.66 0.500404
Target:  5'- uGCGCCGGgGCgUCgggacggggaGCgCGCGGGCGg- -3'
miRNA:   3'- -CGCGGUCgCGgGGg---------CG-GCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 43369 0.68 0.350528
Target:  5'- cUGCUgguggAGCGCCuuCCCGCCGagaugGGGCGUg -3'
miRNA:   3'- cGCGG-----UCGCGG--GGGCGGCg----CCCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.