miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 76679 0.66 0.500404
Target:  5'- cGCGUCGGCGCCgCCGUCcccgaagaaGCGuucgaagaGcGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGgGGCGG---------CGC--------C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 76773 0.67 0.401974
Target:  5'- uCGuCCGGCGCaUCgCCGCCGCGacGGCGa- -3'
miRNA:   3'- cGC-GGUCGCG-GG-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 77724 0.72 0.210922
Target:  5'- cCGCCGGCaccGCCgCCGCCGCaggacuGGGCGa- -3'
miRNA:   3'- cGCGGUCG---CGGgGGCGGCG------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 78347 0.67 0.409706
Target:  5'- gGCGCCGcGCGCUggcgguagagCUCGCUGUcguugaGGGCGUUg -3'
miRNA:   3'- -CGCGGU-CGCGG----------GGGCGGCG------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 78660 0.67 0.409706
Target:  5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3'
miRNA:   3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5'
15928 3' -68.2 NC_004065.1 + 79621 0.68 0.36474
Target:  5'- cCGCUGcGCGCgCggaCGCUGCGGGCGUg -3'
miRNA:   3'- cGCGGU-CGCGgGg--GCGGCGCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 86764 0.75 0.121924
Target:  5'- -aGCUGcCGCCCCCGCCGCGGGUc-- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 86904 0.72 0.206294
Target:  5'- gGCGCCGGUcucGCCCUCgGCgGCGcGcGCGUCg -3'
miRNA:   3'- -CGCGGUCG---CGGGGG-CGgCGC-C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 87169 0.67 0.433446
Target:  5'- uCGuCCAGgaGCCCCUGCacCGCGcGGuCGUCg -3'
miRNA:   3'- cGC-GGUCg-CGGGGGCG--GCGC-CC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 87682 0.69 0.336715
Target:  5'- cUGaCGGUGCUCUCGCCGCcGGCGUUc -3'
miRNA:   3'- cGCgGUCGCGGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 88418 0.67 0.441535
Target:  5'- cCGCCGGCagcggaGCCCgCCGCCGUc-GCGUUg -3'
miRNA:   3'- cGCGGUCG------CGGG-GGCGGCGccCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 90604 0.66 0.490912
Target:  5'- aGCGUccuugagCAGCGCaCuCUCGCugcgCGCGGGcCGUCg -3'
miRNA:   3'- -CGCG-------GUCGCG-G-GGGCG----GCGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 92091 0.75 0.124809
Target:  5'- uGCGCCAGCaGCUCCgaGCC-CGGcGCGUCa -3'
miRNA:   3'- -CGCGGUCG-CGGGGg-CGGcGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 92518 0.66 0.500404
Target:  5'- gGC-CCGGUGCCUCgCGCgCGCguacGGGCGg- -3'
miRNA:   3'- -CGcGGUCGCGGGG-GCG-GCG----CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 94359 0.68 0.386044
Target:  5'- uGCGCgAGC-CCCCCgacgcgcguuacgGCCGCGGcgaGCuGUCg -3'
miRNA:   3'- -CGCGgUCGcGGGGG-------------CGGCGCC---CG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 95804 0.67 0.449709
Target:  5'- gGCGCCAcGCaGCCCCCggggaaaacggaGCCGUaGGUGa- -3'
miRNA:   3'- -CGCGGU-CG-CGGGGG------------CGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 96664 0.66 0.463794
Target:  5'- gGCGUCGGCGggCUCGCCcgacggaggaucguGCGGGCGa- -3'
miRNA:   3'- -CGCGGUCGCggGGGCGG--------------CGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 96851 0.71 0.251234
Target:  5'- aCGgC-GCGCUgUCGCCGCGGGCGcCg -3'
miRNA:   3'- cGCgGuCGCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 97549 0.77 0.094045
Target:  5'- aGCGCCAGCGCCUgCUGCaGCGGGUGc- -3'
miRNA:   3'- -CGCGGUCGCGGG-GGCGgCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 97699 0.67 0.441535
Target:  5'- uCGCUGcCGCCgCCGCC-CGGGCuGUCc -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGcGCCCG-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.