miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 98537 0.67 0.441535
Target:  5'- aCGUCGGgagaCGCCgCCCGUCGCGGcauCGUCc -3'
miRNA:   3'- cGCGGUC----GCGG-GGGCGGCGCCc--GCAG- -5'
15928 3' -68.2 NC_004065.1 + 99540 0.72 0.200409
Target:  5'- -gGUCGGCGCUCCCgucucGCCGCGGcggacggccgugguGCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGG-----CGGCGCC--------------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 99850 0.69 0.316747
Target:  5'- aGCGUCuGCGCCCCgauCGCCGCcGuGCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGG---GCGGCGcC-CGCag -5'
15928 3' -68.2 NC_004065.1 + 99968 0.71 0.230335
Target:  5'- cCGCCgcGGCGUgCUCggGCCGCGGGuCGUCg -3'
miRNA:   3'- cGCGG--UCGCGgGGG--CGGCGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 101457 0.71 0.230335
Target:  5'- cCGCCGacGuCGCUgCCGCUGCGGGCG-Ca -3'
miRNA:   3'- cGCGGU--C-GCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 101577 0.74 0.166192
Target:  5'- cGCGCCcgcGGaCGCCUCCGCCGCGcucagacucgguggcGGCGcCg -3'
miRNA:   3'- -CGCGG---UC-GCGGGGGCGGCGC---------------CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 102066 0.67 0.431036
Target:  5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3'
miRNA:   3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 102429 0.67 0.409706
Target:  5'- -aGCCGGCGCCUCCccuCUGCGaccugaacGGCGUg -3'
miRNA:   3'- cgCGGUCGCGGGGGc--GGCGC--------CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 102893 0.7 0.291532
Target:  5'- cCGCCgguAGCGCCgCCGCCGCgauGGGgGa- -3'
miRNA:   3'- cGCGG---UCGCGGgGGCGGCG---CCCgCag -5'
15928 3' -68.2 NC_004065.1 + 103469 0.73 0.192935
Target:  5'- uGCGCCAcGCGCCCCCGUgcuuCGUGuuGCGUa -3'
miRNA:   3'- -CGCGGU-CGCGGGGGCG----GCGCc-CGCAg -5'
15928 3' -68.2 NC_004065.1 + 103773 0.67 0.449709
Target:  5'- cGCGCUgGGCGgcucgaUCCCCGCa-CGGGCGUg -3'
miRNA:   3'- -CGCGG-UCGC------GGGGGCGgcGCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 104609 0.69 0.323303
Target:  5'- gGCGCUGGCGCCggCCGacuuccacgacCUGCGGGCGa- -3'
miRNA:   3'- -CGCGGUCGCGGg-GGC-----------GGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 106439 0.74 0.160964
Target:  5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 107529 0.73 0.176306
Target:  5'- uGCGCgCGGCGaCCgCCCaGCUGCGGGuCGUg -3'
miRNA:   3'- -CGCG-GUCGC-GG-GGG-CGGCGCCC-GCAg -5'
15928 3' -68.2 NC_004065.1 + 107770 0.66 0.499538
Target:  5'- -gGCCGGCgggggguuaggacGCCgCCCggauacuugGCCGUGGGCGa- -3'
miRNA:   3'- cgCGGUCG-------------CGG-GGG---------CGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 109473 0.66 0.457966
Target:  5'- cCGCUcGCGCCgaCCGCCGCcGGCa-- -3'
miRNA:   3'- cGCGGuCGCGGg-GGCGGCGcCCGcag -5'
15928 3' -68.2 NC_004065.1 + 109620 0.7 0.27367
Target:  5'- cGgGCCgcGGUGCCCaccaCCGUCGaGGGCGUCc -3'
miRNA:   3'- -CgCGG--UCGCGGG----GGCGGCgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 109772 0.71 0.22485
Target:  5'- cGCGCCggucagcagggcaGGCGCUa-CGCCGCGGGCa-- -3'
miRNA:   3'- -CGCGG-------------UCGCGGggGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 109864 0.7 0.262257
Target:  5'- gGUGCCgggcGGUGCCaCCggcguCGCCGCGGccGCGUCg -3'
miRNA:   3'- -CGCGG----UCGCGG-GG-----GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 110144 0.66 0.483209
Target:  5'- cGCGCCGGCaaGUUCUCGCUcaGGGaCGUCu -3'
miRNA:   3'- -CGCGGUCG--CGGGGGCGGcgCCC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.