miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 110403 0.71 0.230335
Target:  5'- aCGCCacggccgacGGCGucuCCUCCGCCGCcGGCGUCc -3'
miRNA:   3'- cGCGG---------UCGC---GGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 111931 0.67 0.433446
Target:  5'- aCGCCaugGGCGCCgCCGUCGC-GGUGg- -3'
miRNA:   3'- cGCGG---UCGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 112623 0.68 0.350528
Target:  5'- cGCGCCGcgaGCCCagCGCgCGCGGccgaGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGGGg-GCG-GCGCC----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 114009 0.68 0.357585
Target:  5'- cCGUCGGCagagagcuGCCCCCGCgGCGcaCGUCg -3'
miRNA:   3'- cGCGGUCG--------CGGGGGCGgCGCccGCAG- -5'
15928 3' -68.2 NC_004065.1 + 116011 0.66 0.491772
Target:  5'- uGCGCCgcgggGGCaGCuCUCUGCCGaCGGGUcUCg -3'
miRNA:   3'- -CGCGG-----UCG-CG-GGGGCGGC-GCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 118325 0.68 0.357585
Target:  5'- uCGCCAGCGggaCCGCCGaCGuccauGGCGUCg -3'
miRNA:   3'- cGCGGUCGCgggGGCGGC-GC-----CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 119808 0.69 0.308376
Target:  5'- cCGCCGGCgaaGCCCUCuucccucucgacggGCgGCGGcGCGUCg -3'
miRNA:   3'- cGCGGUCG---CGGGGG--------------CGgCGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 120186 0.66 0.466303
Target:  5'- uGCGCgauGGC-CCCCCGCCGCagcaggacGGCGa- -3'
miRNA:   3'- -CGCGg--UCGcGGGGGCGGCGc-------CCGCag -5'
15928 3' -68.2 NC_004065.1 + 121700 0.71 0.245866
Target:  5'- aUGCCcccGuCGCCCCgcaCGCuUGCGGGCGUCa -3'
miRNA:   3'- cGCGGu--C-GCGGGG---GCG-GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 122475 0.66 0.466303
Target:  5'- gGCGUCccgguAGCGCacgaCCCGCaGCuGGGCGgUCg -3'
miRNA:   3'- -CGCGG-----UCGCGg---GGGCGgCG-CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 123554 0.68 0.371994
Target:  5'- aGCGCC-GCGUCCUCGUCGUacGGGuCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGGGCGGCG--CCC-GCag -5'
15928 3' -68.2 NC_004065.1 + 123767 0.66 0.490053
Target:  5'- uGCGCC-GCGCgCCgGUCGCcugucggacccaGGCGUCc -3'
miRNA:   3'- -CGCGGuCGCGgGGgCGGCGc-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 124087 0.71 0.251234
Target:  5'- uGCGUCgAGCacCCCCCGCaCGCGguGGCGUUg -3'
miRNA:   3'- -CGCGG-UCGc-GGGGGCG-GCGC--CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 124635 0.67 0.425443
Target:  5'- -gGUCAGCGCCUCC-UCGCcGGcCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGGcGGCGcCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 124791 0.66 0.474718
Target:  5'- uGCGCCAccaucuccuCGUCCgaCGuCCGcCGGGCGUCc -3'
miRNA:   3'- -CGCGGUc--------GCGGGg-GC-GGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 125135 0.74 0.143485
Target:  5'- cGCGCCGuCGCCCa-GCCGCGuGGCGaUCa -3'
miRNA:   3'- -CGCGGUcGCGGGggCGGCGC-CCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 125426 0.69 0.316747
Target:  5'- -gGCCGGCGCCagCGCCuCGGGCa-- -3'
miRNA:   3'- cgCGGUCGCGGggGCGGcGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 125625 0.7 0.278935
Target:  5'- cGCGCCugguagaAGUGCacgagCCGCCGCGuGGCGUg -3'
miRNA:   3'- -CGCGG-------UCGCGgg---GGCGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 126321 0.7 0.297685
Target:  5'- cCGCCAgGCGCuCCCCGCCGCccaccGUGUa -3'
miRNA:   3'- cGCGGU-CGCG-GGGGCGGCGcc---CGCAg -5'
15928 3' -68.2 NC_004065.1 + 127636 0.66 0.457966
Target:  5'- cCGCUcGCGCUgCCGCUGC-GGCGcCg -3'
miRNA:   3'- cGCGGuCGCGGgGGCGGCGcCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.