miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 198629 0.66 0.457966
Target:  5'- uGCGCCAGgGUCCCgGCCGagaGGaucCGcCg -3'
miRNA:   3'- -CGCGGUCgCGGGGgCGGCg--CCc--GCaG- -5'
15928 3' -68.2 NC_004065.1 + 198377 0.69 0.303939
Target:  5'- -gGUCGGCGUCaaCGCCGUGGGCcagGUCu -3'
miRNA:   3'- cgCGGUCGCGGggGCGGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 197798 0.66 0.46463
Target:  5'- cGCGuuggucaCCAGCGCCCgCGgCGCcacguugGGGuCGUCc -3'
miRNA:   3'- -CGC-------GGUCGCGGGgGCgGCG-------CCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 196551 0.7 0.279525
Target:  5'- gGCGCguaGGCGCCCaCgGCCGCGaacGCGUg -3'
miRNA:   3'- -CGCGg--UCGCGGG-GgCGGCGCc--CGCAg -5'
15928 3' -68.2 NC_004065.1 + 195086 0.69 0.303939
Target:  5'- aGCGCgCGGCGCagaCCC-CCaG-GGGCGUCa -3'
miRNA:   3'- -CGCG-GUCGCGg--GGGcGG-CgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 194381 0.67 0.449709
Target:  5'- gGCgGCCGGUcuucGUCCCUguggggacagaGCgGCGGGCGUUc -3'
miRNA:   3'- -CG-CGGUCG----CGGGGG-----------CGgCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 193844 0.67 0.409706
Target:  5'- uUGCUGcGCGCCCCC-CCGCGaGCGg- -3'
miRNA:   3'- cGCGGU-CGCGGGGGcGGCGCcCGCag -5'
15928 3' -68.2 NC_004065.1 + 188068 0.69 0.316748
Target:  5'- aGCGCCAGCGUcgagaaCCCgGCCGUGcacgacGCGUa -3'
miRNA:   3'- -CGCGGUCGCG------GGGgCGGCGCc-----CGCAg -5'
15928 3' -68.2 NC_004065.1 + 187367 0.69 0.336035
Target:  5'- cGCGUCAGCGUCCCgaucuuugccagcUGgCGCGcggcgcgguguGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGGG-------------GCgGCGC-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 186693 0.66 0.474718
Target:  5'- gGCGCguggGGCGUCCCCGCCG-GGccagaugacGaCGUCg -3'
miRNA:   3'- -CGCGg---UCGCGGGGGCGGCgCC---------C-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 184484 0.67 0.417529
Target:  5'- gGCGgCuGcCGCCgCCGCCGCGGcgccgggugGCGUa -3'
miRNA:   3'- -CGCgGuC-GCGGgGGCGGCGCC---------CGCAg -5'
15928 3' -68.2 NC_004065.1 + 184039 0.68 0.350528
Target:  5'- cCGCCacGGCGCCCagguCGCCGUuacacacGGCGUCc -3'
miRNA:   3'- cGCGG--UCGCGGGg---GCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 182697 0.67 0.432642
Target:  5'- -gGCCAuccguuGC-CCCCCGCCGCggaucggccucacGGGCGa- -3'
miRNA:   3'- cgCGGU------CGcGGGGGCGGCG-------------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 173908 0.66 0.457966
Target:  5'- -gGCgAGCGCCgCCGUCGUccGGGacgGUCa -3'
miRNA:   3'- cgCGgUCGCGGgGGCGGCG--CCCg--CAG- -5'
15928 3' -68.2 NC_004065.1 + 173309 0.68 0.371994
Target:  5'- uGCuGCCGcCGCCgCCGCCGCuGcGGCGg- -3'
miRNA:   3'- -CG-CGGUcGCGGgGGCGGCG-C-CCGCag -5'
15928 3' -68.2 NC_004065.1 + 171879 0.67 0.425443
Target:  5'- cCGCCGGCGacgaUUUCGCCGCcuGCGUCg -3'
miRNA:   3'- cGCGGUCGCg---GGGGCGGCGccCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 171402 0.75 0.130769
Target:  5'- cGCGagaCCGGCGaCUCCGCCGCGcGCGUCg -3'
miRNA:   3'- -CGC---GGUCGCgGGGGCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 170314 0.66 0.466303
Target:  5'- uCGCCGuGCGCCgCgGCCGCucGGCGcCc -3'
miRNA:   3'- cGCGGU-CGCGGgGgCGGCGc-CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 169854 0.67 0.425443
Target:  5'- cGgGCCAGCGUCgaCCUGUgcaugGCGGGCGcCg -3'
miRNA:   3'- -CgCGGUCGCGG--GGGCGg----CGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 169331 0.66 0.491772
Target:  5'- gGCG-CAGCGCCaucaccguCUCGCCcugGUGGGcCGUCu -3'
miRNA:   3'- -CGCgGUCGCGG--------GGGCGG---CGCCC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.