miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 168818 0.66 0.483209
Target:  5'- uCGCCAuCaucCCCUCGCCGCGGGUc-- -3'
miRNA:   3'- cGCGGUcGc--GGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 168621 0.72 0.201754
Target:  5'- gGCuGCUGGCGCUggUGCCGCGGGCGg- -3'
miRNA:   3'- -CG-CGGUCGCGGggGCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163908 0.66 0.491772
Target:  5'- cGCGCCAGCGCCUCggugaUGUCGCcccccaGcGCGUg -3'
miRNA:   3'- -CGCGGUCGCGGGG-----GCGGCGc-----C-CGCAg -5'
15928 3' -68.2 NC_004065.1 + 163502 0.67 0.433446
Target:  5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 163387 0.67 0.425443
Target:  5'- aGCGUCAGCGCgUCCGCCaCGcaGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGgGGGCGGcGCc-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 163267 0.67 0.409706
Target:  5'- gGCGCCGGCGCCUCC-UCGCGauuccGGUa-- -3'
miRNA:   3'- -CGCGGUCGCGGGGGcGGCGC-----CCGcag -5'
15928 3' -68.2 NC_004065.1 + 162776 0.71 0.240073
Target:  5'- -gGCCGcgauaacGCGUgCCCCGugauacCCGCGGGCGUCu -3'
miRNA:   3'- cgCGGU-------CGCG-GGGGC------GGCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 161436 0.66 0.457137
Target:  5'- cGUGUCGGCGCUCuggaucgCCGCCGCc-GCGUUg -3'
miRNA:   3'- -CGCGGUCGCGGG-------GGCGGCGccCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 160859 0.66 0.457966
Target:  5'- uCGCCuuCGCCUCCGCCuCGuccaGCGUCg -3'
miRNA:   3'- cGCGGucGCGGGGGCGGcGCc---CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 159913 0.68 0.357585
Target:  5'- gGCGCCGcCGCCgCCGCUGCcGGUGc- -3'
miRNA:   3'- -CGCGGUcGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 159660 0.76 0.108408
Target:  5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 159495 0.67 0.449709
Target:  5'- cGCGCCugcaggcGCGCCUgcagcuCCGUCGagaaGGGCGcCg -3'
miRNA:   3'- -CGCGGu------CGCGGG------GGCGGCg---CCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 155193 0.7 0.297685
Target:  5'- uGCGCCGccuCGgUCCCGaCC-CGGGCGUCu -3'
miRNA:   3'- -CGCGGUc--GCgGGGGC-GGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 153286 0.68 0.371994
Target:  5'- cCGCCGGCGCcgcgcccguCCCCGCCGaGGaGUG-Ca -3'
miRNA:   3'- cGCGGUCGCG---------GGGGCGGCgCC-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 152921 0.67 0.433446
Target:  5'- uCGgCGGCGCUgCCGCCGCGG-Ca-- -3'
miRNA:   3'- cGCgGUCGCGGgGGCGGCGCCcGcag -5'
15928 3' -68.2 NC_004065.1 + 152016 0.67 0.420684
Target:  5'- cGCGCuCAGCucgaacggcuccuccGUCCCggggcggcuCGCCGCGGccaGCGUCu -3'
miRNA:   3'- -CGCG-GUCG---------------CGGGG---------GCGGCGCC---CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 151360 0.71 0.251234
Target:  5'- gGCGCCgcGGCGCCggCCGCUGCGcuGGCGg- -3'
miRNA:   3'- -CGCGG--UCGCGGg-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 149881 0.67 0.425443
Target:  5'- uCGUCAGcCGCCUCUGCCGCgccaGGGaCGa- -3'
miRNA:   3'- cGCGGUC-GCGGGGGCGGCG----CCC-GCag -5'
15928 3' -68.2 NC_004065.1 + 147873 0.66 0.486626
Target:  5'- gGUGCCucgccaggagguacAGCGUCCgCGCCGCcggauacgucagccGGGCG-Ca -3'
miRNA:   3'- -CGCGG--------------UCGCGGGgGCGGCG--------------CCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 147392 0.67 0.406602
Target:  5'- gGCGCagaGGUucGCCCCCGgacgcaaCCGCGuccagcagcacgacGGCGUCa -3'
miRNA:   3'- -CGCGg--UCG--CGGGGGC-------GGCGC--------------CCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.