miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 146716 0.66 0.482357
Target:  5'- aCGCC-GCGCUcgacgacgagagcUCCGUCGCccacaucuauguGGGCGUCg -3'
miRNA:   3'- cGCGGuCGCGG-------------GGGCGGCG------------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 146173 0.77 0.100986
Target:  5'- aUGCuCAGCgaGCCCuCCGCCGUGGGCGcCa -3'
miRNA:   3'- cGCG-GUCG--CGGG-GGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 145756 0.76 0.119101
Target:  5'- uGCGCCGaucgcgucGCGCgCCgGUCGCGGGCGcUCg -3'
miRNA:   3'- -CGCGGU--------CGCGgGGgCGGCGCCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 142209 0.68 0.36474
Target:  5'- aGCGuguuuCCAGCGUCCCCGUgugCGCGuugcgccuGGCGUa -3'
miRNA:   3'- -CGC-----GGUCGCGGGGGCG---GCGC--------CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 141642 0.66 0.457966
Target:  5'- cGCGCCAGCugGCCUacaCCGCCaccuuGCuGGGCa-- -3'
miRNA:   3'- -CGCGGUCG--CGGG---GGCGG-----CG-CCCGcag -5'
15928 3' -68.2 NC_004065.1 + 138653 0.69 0.316748
Target:  5'- -aGCUAGguauCGCCCCCGCCGaguacacgGGGCacGUCg -3'
miRNA:   3'- cgCGGUC----GCGGGGGCGGCg-------CCCG--CAG- -5'
15928 3' -68.2 NC_004065.1 + 138224 0.71 0.225344
Target:  5'- cGCGCUcugcgaugucgaGGCGCUCgCCGCCGUcgaggagggucGGGUGUCc -3'
miRNA:   3'- -CGCGG------------UCGCGGG-GGCGGCG-----------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 135828 0.71 0.230335
Target:  5'- gGCGUCGGCGaucuggcgaCCUCGUCGaUGGGUGUCg -3'
miRNA:   3'- -CGCGGUCGCg--------GGGGCGGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 135636 0.69 0.343572
Target:  5'- gGCGCCAccaGCCgacagCUCGCCGCGGccguaacgcGCGUCg -3'
miRNA:   3'- -CGCGGUcg-CGG-----GGGCGGCGCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 133992 0.66 0.483209
Target:  5'- gGgGCCcGUGCCCaCGCaCGCGGGgG-Cg -3'
miRNA:   3'- -CgCGGuCGCGGGgGCG-GCGCCCgCaG- -5'
15928 3' -68.2 NC_004065.1 + 132379 0.67 0.401974
Target:  5'- cGCGaacaaaCCGGCGUCUCCguGCCGCaaGGGCGg- -3'
miRNA:   3'- -CGC------GGUCGCGGGGG--CGGCG--CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 130734 0.73 0.172353
Target:  5'- gGgGCUAuGUGCCCCuCGUCGUGGGCGa- -3'
miRNA:   3'- -CgCGGU-CGCGGGG-GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 130661 0.67 0.417529
Target:  5'- -aGUCGGCGCCgUCGCUGCcaacgcucgucGGGCGa- -3'
miRNA:   3'- cgCGGUCGCGGgGGCGGCG-----------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 130615 0.67 0.441535
Target:  5'- cCGCUcGgGCCCCUGCUGCGaGCG-Ca -3'
miRNA:   3'- cGCGGuCgCGGGGGCGGCGCcCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 130071 0.72 0.209989
Target:  5'- gGCGUuucgcagCAGCaGCCgCCGCCGCGgcgguccGGCGUCa -3'
miRNA:   3'- -CGCG-------GUCG-CGGgGGCGGCGC-------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 129429 0.68 0.350528
Target:  5'- -aGCUGuGCGCCUCggaccgguacgUGCCGCGGGCGg- -3'
miRNA:   3'- cgCGGU-CGCGGGG-----------GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 128610 0.75 0.140204
Target:  5'- cGCGCCAGcCGCCCCCacgGUCGuuGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGGGGG---CGGCgcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 128422 0.67 0.409706
Target:  5'- gGCGgCGGCGCCgCCaccgagucugagCGCgGCGGagGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGG-GG------------GCGgCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 127978 0.74 0.150258
Target:  5'- gGCGCUAaCGCCCggCCGCCGCGGGUc-- -3'
miRNA:   3'- -CGCGGUcGCGGG--GGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 127636 0.66 0.457966
Target:  5'- cCGCUcGCGCUgCCGCUGC-GGCGcCg -3'
miRNA:   3'- cGCGGuCGCGGgGGCGGCGcCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.