miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 135828 0.71 0.230335
Target:  5'- gGCGUCGGCGaucuggcgaCCUCGUCGaUGGGUGUCg -3'
miRNA:   3'- -CGCGGUCGCg--------GGGGCGGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 99540 0.72 0.200409
Target:  5'- -gGUCGGCGCUCCCgucucGCCGCGGcggacggccgugguGCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGG-----CGGCGCC--------------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 168621 0.72 0.201754
Target:  5'- gGCuGCUGGCGCUggUGCCGCGGGCGg- -3'
miRNA:   3'- -CG-CGGUCGCGGggGCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 130071 0.72 0.209989
Target:  5'- gGCGUuucgcagCAGCaGCCgCCGCCGCGgcgguccGGCGUCa -3'
miRNA:   3'- -CGCG-------GUCG-CGGgGGCGGCGC-------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 52550 0.72 0.215639
Target:  5'- cCGCCGuGCGCCCCCGCCGa--GCG-Ca -3'
miRNA:   3'- cGCGGU-CGCGGGGGCGGCgccCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 199890 0.72 0.220446
Target:  5'- aGCgGCCGGuCGCCCUCcCCGgGGGUGUg -3'
miRNA:   3'- -CG-CGGUC-GCGGGGGcGGCgCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 109772 0.71 0.22485
Target:  5'- cGCGCCggucagcagggcaGGCGCUa-CGCCGCGGGCa-- -3'
miRNA:   3'- -CGCGG-------------UCGCGGggGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 138224 0.71 0.225344
Target:  5'- cGCGCUcugcgaugucgaGGCGCUCgCCGCCGUcgaggagggucGGGUGUCc -3'
miRNA:   3'- -CGCGG------------UCGCGGG-GGCGGCG-----------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 66537 0.71 0.225344
Target:  5'- aGCGCCuGCGCUUCaaCCGCGcGGCGUg -3'
miRNA:   3'- -CGCGGuCGCGGGGgcGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 130734 0.73 0.172353
Target:  5'- gGgGCUAuGUGCCCCuCGUCGUGGGCGa- -3'
miRNA:   3'- -CgCGGU-CGCGGGG-GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 66772 0.74 0.155171
Target:  5'- gGCGCCGGCGCCgCCGCUGCgccgacgaaacaugaGcGGaCGUCc -3'
miRNA:   3'- -CGCGGUCGCGGgGGCGGCG---------------C-CC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 127978 0.74 0.150258
Target:  5'- gGCGCUAaCGCCCggCCGCCGCGGGUc-- -3'
miRNA:   3'- -CGCGGUcGCGGG--GGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 32935 0.77 0.094045
Target:  5'- -gGCCGGUcgGCUCCCGCgcggaUGCGGGCGUCg -3'
miRNA:   3'- cgCGGUCG--CGGGGGCG-----GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 146173 0.77 0.100986
Target:  5'- aUGCuCAGCgaGCCCuCCGCCGUGGGCGcCa -3'
miRNA:   3'- cGCG-GUCG--CGGG-GGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 145756 0.76 0.119101
Target:  5'- uGCGCCGaucgcgucGCGCgCCgGUCGCGGGCGcUCg -3'
miRNA:   3'- -CGCGGU--------CGCGgGGgCGGCGCCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 86764 0.75 0.121924
Target:  5'- -aGCUGcCGCCCCCGCCGCGGGUc-- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 92091 0.75 0.124809
Target:  5'- uGCGCCAGCaGCUCCgaGCC-CGGcGCGUCa -3'
miRNA:   3'- -CGCGGUCG-CGGGGg-CGGcGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 62602 0.75 0.124809
Target:  5'- aGCGCCGcCGCCCCCGCCgGCGGcagcagccGCGg- -3'
miRNA:   3'- -CGCGGUcGCGGGGGCGG-CGCC--------CGCag -5'
15928 3' -68.2 NC_004065.1 + 128610 0.75 0.140204
Target:  5'- cGCGCCAGcCGCCCCCacgGUCGuuGGCGg- -3'
miRNA:   3'- -CGCGGUC-GCGGGGG---CGGCgcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 125135 0.74 0.143485
Target:  5'- cGCGCCGuCGCCCa-GCCGCGuGGCGaUCa -3'
miRNA:   3'- -CGCGGUcGCGGGggCGGCGC-CCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.