miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 66537 0.71 0.225344
Target:  5'- aGCGCCuGCGCUUCaaCCGCGcGGCGUg -3'
miRNA:   3'- -CGCGGuCGCGGGGgcGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 135828 0.71 0.230335
Target:  5'- gGCGUCGGCGaucuggcgaCCUCGUCGaUGGGUGUCg -3'
miRNA:   3'- -CGCGGUCGCg--------GGGGCGGC-GCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 196551 0.7 0.279525
Target:  5'- gGCGCguaGGCGCCCaCgGCCGCGaacGCGUg -3'
miRNA:   3'- -CGCGg--UCGCGGG-GgCGGCGCc--CGCAg -5'
15928 3' -68.2 NC_004065.1 + 44267 0.7 0.285479
Target:  5'- uGUGCCAGaCGCCCCacaUGUGGGCccgGUCg -3'
miRNA:   3'- -CGCGGUC-GCGGGGgcgGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 222656 0.7 0.291532
Target:  5'- cGCGUCAGCGCCCCaCGuCCGaCaGuaGUCc -3'
miRNA:   3'- -CGCGGUCGCGGGG-GC-GGC-GcCcgCAG- -5'
15928 3' -68.2 NC_004065.1 + 126321 0.7 0.297685
Target:  5'- cCGCCAgGCGCuCCCCGCCGCccaccGUGUa -3'
miRNA:   3'- cGCGGU-CGCG-GGGGCGGCGcc---CGCAg -5'
15928 3' -68.2 NC_004065.1 + 195086 0.69 0.303939
Target:  5'- aGCGCgCGGCGCagaCCC-CCaG-GGGCGUCa -3'
miRNA:   3'- -CGCG-GUCGCGg--GGGcGG-CgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 99850 0.69 0.316747
Target:  5'- aGCGUCuGCGCCCCgauCGCCGCcGuGCGa- -3'
miRNA:   3'- -CGCGGuCGCGGGG---GCGGCGcC-CGCag -5'
15928 3' -68.2 NC_004065.1 + 125426 0.69 0.316747
Target:  5'- -gGCCGGCGCCagCGCCuCGGGCa-- -3'
miRNA:   3'- cgCGGUCGCGGggGCGGcGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 201151 0.69 0.342882
Target:  5'- gGCGCCAGCaGUCCUcgucacgcagcagCGCCgacaccaaGCGGcGCGUCc -3'
miRNA:   3'- -CGCGGUCG-CGGGG-------------GCGG--------CGCC-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 125625 0.7 0.278935
Target:  5'- cGCGCCugguagaAGUGCacgagCCGCCGCGuGGCGUg -3'
miRNA:   3'- -CGCGG-------UCGCGgg---GGCGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 201027 0.7 0.27367
Target:  5'- uGCGCgCGGCGCCUcgccaCCGCCGcCGGagacugauccGUGUCg -3'
miRNA:   3'- -CGCG-GUCGCGGG-----GGCGGC-GCC----------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 99968 0.71 0.230335
Target:  5'- cCGCCgcGGCGUgCUCggGCCGCGGGuCGUCg -3'
miRNA:   3'- cGCGG--UCGCGgGGG--CGGCGCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 110403 0.71 0.230335
Target:  5'- aCGCCacggccgacGGCGucuCCUCCGCCGCcGGCGUCc -3'
miRNA:   3'- cGCGG---------UCGC---GGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 96851 0.71 0.251234
Target:  5'- aCGgC-GCGCUgUCGCCGCGGGCGcCg -3'
miRNA:   3'- cGCgGuCGCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 201365 0.71 0.251234
Target:  5'- uGCGCgAGCuGCgCCUCGCCGgGGGgugccaCGUCg -3'
miRNA:   3'- -CGCGgUCG-CG-GGGGCGGCgCCC------GCAG- -5'
15928 3' -68.2 NC_004065.1 + 25472 0.71 0.256697
Target:  5'- aCGCgCAGCaCCuCCCGCCGCccgacgaGGCGUCu -3'
miRNA:   3'- cGCG-GUCGcGG-GGGCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 76376 0.71 0.256697
Target:  5'- cGCGCCGGCGCCgccgcggaugagCUCGCCGCcguccgaguGGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGG------------GGGCGGCGc--------CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 109864 0.7 0.262257
Target:  5'- gGUGCCgggcGGUGCCaCCggcguCGCCGCGGccGCGUCg -3'
miRNA:   3'- -CGCGG----UCGCGG-GG-----GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 109620 0.7 0.27367
Target:  5'- cGgGCCgcGGUGCCCaccaCCGUCGaGGGCGUCc -3'
miRNA:   3'- -CgCGG--UCGCGGG----GGCGGCgCCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.