Results 81 - 100 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15928 | 3' | -68.2 | NC_004065.1 | + | 123554 | 0.68 | 0.371994 |
Target: 5'- aGCGCC-GCGUCCUCGUCGUacGGGuCGa- -3' miRNA: 3'- -CGCGGuCGCGGGGGCGGCG--CCC-GCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 36853 | 0.68 | 0.374922 |
Target: 5'- aGCGCCAGaaacagaacgcgcauCGCCgCCCaGCaGCaGGCGUCc -3' miRNA: 3'- -CGCGGUC---------------GCGG-GGG-CGgCGcCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 99850 | 0.69 | 0.316747 |
Target: 5'- aGCGUCuGCGCCCCgauCGCCGCcGuGCGa- -3' miRNA: 3'- -CGCGGuCGCGGGG---GCGGCGcC-CGCag -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 195086 | 0.69 | 0.303939 |
Target: 5'- aGCGCgCGGCGCagaCCC-CCaG-GGGCGUCa -3' miRNA: 3'- -CGCG-GUCGCGg--GGGcGG-CgCCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 25472 | 0.71 | 0.256697 |
Target: 5'- aCGCgCAGCaCCuCCCGCCGCccgacgaGGCGUCu -3' miRNA: 3'- cGCG-GUCGcGG-GGGCGGCGc------CCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 76376 | 0.71 | 0.256697 |
Target: 5'- cGCGCCGGCGCCgccgcggaugagCUCGCCGCcguccgaguGGCGcCg -3' miRNA: 3'- -CGCGGUCGCGG------------GGGCGGCGc--------CCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 109864 | 0.7 | 0.262257 |
Target: 5'- gGUGCCgggcGGUGCCaCCggcguCGCCGCGGccGCGUCg -3' miRNA: 3'- -CGCGG----UCGCGG-GG-----GCGGCGCC--CGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 109620 | 0.7 | 0.27367 |
Target: 5'- cGgGCCgcGGUGCCCaccaCCGUCGaGGGCGUCc -3' miRNA: 3'- -CgCGG--UCGCGGG----GGCGGCgCCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 201027 | 0.7 | 0.27367 |
Target: 5'- uGCGCgCGGCGCCUcgccaCCGCCGcCGGagacugauccGUGUCg -3' miRNA: 3'- -CGCG-GUCGCGGG-----GGCGGC-GCC----------CGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 125625 | 0.7 | 0.278935 |
Target: 5'- cGCGCCugguagaAGUGCacgagCCGCCGCGuGGCGUg -3' miRNA: 3'- -CGCGG-------UCGCGgg---GGCGGCGC-CCGCAg -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 196551 | 0.7 | 0.279525 |
Target: 5'- gGCGCguaGGCGCCCaCgGCCGCGaacGCGUg -3' miRNA: 3'- -CGCGg--UCGCGGG-GgCGGCGCc--CGCAg -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 44267 | 0.7 | 0.285479 |
Target: 5'- uGUGCCAGaCGCCCCacaUGUGGGCccgGUCg -3' miRNA: 3'- -CGCGGUC-GCGGGGgcgGCGCCCG---CAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 222656 | 0.7 | 0.291532 |
Target: 5'- cGCGUCAGCGCCCCaCGuCCGaCaGuaGUCc -3' miRNA: 3'- -CGCGGUCGCGGGG-GC-GGC-GcCcgCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 126321 | 0.7 | 0.297685 |
Target: 5'- cCGCCAgGCGCuCCCCGCCGCccaccGUGUa -3' miRNA: 3'- cGCGGU-CGCG-GGGGCGGCGcc---CGCAg -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 106439 | 0.74 | 0.160964 |
Target: 5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3' miRNA: 3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 63874 | 0.75 | 0.133847 |
Target: 5'- aCGUCGGCGCCgCUGCCGCcGGCGcCg -3' miRNA: 3'- cGCGGUCGCGGgGGCGGCGcCCGCaG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 171402 | 0.75 | 0.130769 |
Target: 5'- cGCGagaCCGGCGaCUCCGCCGCGcGCGUCg -3' miRNA: 3'- -CGC---GGUCGCgGGGGCGGCGCcCGCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 29168 | 0.75 | 0.126866 |
Target: 5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3' miRNA: 3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 159660 | 0.76 | 0.108408 |
Target: 5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3' miRNA: 3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5' |
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15928 | 3' | -68.2 | NC_004065.1 | + | 202268 | 0.66 | 0.500404 |
Target: 5'- gGCG-CAGCGUCUCgaugCGCgGCGGG-GUCa -3' miRNA: 3'- -CGCgGUCGCGGGG----GCGgCGCCCgCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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