miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 4646 1.09 0.000458
Target:  5'- aGCGCCAGCGCCCCCGCCGCGGGCGUCc -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 121700 0.71 0.245866
Target:  5'- aUGCCcccGuCGCCCCgcaCGCuUGCGGGCGUCa -3'
miRNA:   3'- cGCGGu--C-GCGGGG---GCG-GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 151360 0.71 0.251234
Target:  5'- gGCGCCgcGGCGCCggCCGCUGCGcuGGCGg- -3'
miRNA:   3'- -CGCGG--UCGCGGg-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 202268 0.66 0.500404
Target:  5'- gGCG-CAGCGUCUCgaugCGCgGCGGG-GUCa -3'
miRNA:   3'- -CGCgGUCGCGGGG----GCGgCGCCCgCAG- -5'
15928 3' -68.2 NC_004065.1 + 63874 0.75 0.133847
Target:  5'- aCGUCGGCGCCgCUGCCGCcGGCGcCg -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCGcCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 106439 0.74 0.160964
Target:  5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 107529 0.73 0.176306
Target:  5'- uGCGCgCGGCGaCCgCCCaGCUGCGGGuCGUg -3'
miRNA:   3'- -CGCG-GUCGC-GG-GGG-CGGCGCCC-GCAg -5'
15928 3' -68.2 NC_004065.1 + 746 0.73 0.188653
Target:  5'- cGCGaCCAGCGUgCCgCGUCGCGGGU-UCg -3'
miRNA:   3'- -CGC-GGUCGCGgGG-GCGGCGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 86904 0.72 0.206294
Target:  5'- gGCGCCGGUcucGCCCUCgGCgGCGcGcGCGUCg -3'
miRNA:   3'- -CGCGGUCG---CGGGGG-CGgCGC-C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 162776 0.71 0.240073
Target:  5'- -gGCCGcgauaacGCGUgCCCCGugauacCCGCGGGCGUCu -3'
miRNA:   3'- cgCGGU-------CGCG-GGGGC------GGCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 101457 0.71 0.230335
Target:  5'- cCGCCGacGuCGCUgCCGCUGCGGGCG-Ca -3'
miRNA:   3'- cGCGGU--C-GCGGgGGCGGCGCCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 32887 0.72 0.206294
Target:  5'- cGCGCCGGCgaGCgUCUGCCGCuGGGCaUCc -3'
miRNA:   3'- -CGCGGUCG--CGgGGGCGGCG-CCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 159660 0.76 0.108408
Target:  5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 66726 0.71 0.235418
Target:  5'- -gGCUGGCGCCCgUGCCGuCGGaccccggcgGCGUCg -3'
miRNA:   3'- cgCGGUCGCGGGgGCGGC-GCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 29168 0.75 0.126866
Target:  5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3'
miRNA:   3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 103469 0.73 0.192935
Target:  5'- uGCGCCAcGCGCCCCCGUgcuuCGUGuuGCGUa -3'
miRNA:   3'- -CGCGGU-CGCGGGGGCG----GCGCc-CGCAg -5'
15928 3' -68.2 NC_004065.1 + 75871 0.71 0.235418
Target:  5'- cCGCCGcCGCCgCCGCCGCcaccgcccgGGGCGaUCg -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGCG---------CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 124087 0.71 0.251234
Target:  5'- uGCGUCgAGCacCCCCCGCaCGCGguGGCGUUg -3'
miRNA:   3'- -CGCGG-UCGc-GGGGGCG-GCGC--CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 171402 0.75 0.130769
Target:  5'- cGCGagaCCGGCGaCUCCGCCGCGcGCGUCg -3'
miRNA:   3'- -CGC---GGUCGCgGGGGCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 101577 0.74 0.166192
Target:  5'- cGCGCCcgcGGaCGCCUCCGCCGCGcucagacucgguggcGGCGcCg -3'
miRNA:   3'- -CGCGG---UC-GCGGGGGCGGCGC---------------CCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.