miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 43369 0.68 0.350528
Target:  5'- cUGCUgguggAGCGCCuuCCCGCCGagaugGGGCGUg -3'
miRNA:   3'- cGCGG-----UCGCGG--GGGCGGCg----CCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 121700 0.71 0.245866
Target:  5'- aUGCCcccGuCGCCCCgcaCGCuUGCGGGCGUCa -3'
miRNA:   3'- cGCGGu--C-GCGGGG---GCG-GCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 29168 0.75 0.126866
Target:  5'- cCGCCcGCGCCCCCGUCGacgccgaacuccacCGGGuCGUCc -3'
miRNA:   3'- cGCGGuCGCGGGGGCGGC--------------GCCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 129429 0.68 0.350528
Target:  5'- -aGCUGuGCGCCUCggaccgguacgUGCCGCGGGCGg- -3'
miRNA:   3'- cgCGGU-CGCGGGG-----------GCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 159660 0.76 0.108408
Target:  5'- cGCGCCAGCGUCUCCGUCcUGGGC-UCu -3'
miRNA:   3'- -CGCGGUCGCGGGGGCGGcGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 163502 0.67 0.433446
Target:  5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 63874 0.75 0.133847
Target:  5'- aCGUCGGCGCCgCUGCCGCcGGCGcCg -3'
miRNA:   3'- cGCGGUCGCGGgGGCGGCGcCCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 102066 0.67 0.431036
Target:  5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3'
miRNA:   3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163387 0.67 0.425443
Target:  5'- aGCGUCAGCGCgUCCGCCaCGcaGCGcCg -3'
miRNA:   3'- -CGCGGUCGCGgGGGCGGcGCc-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 163267 0.67 0.409706
Target:  5'- gGCGCCGGCGCCUCC-UCGCGauuccGGUa-- -3'
miRNA:   3'- -CGCGGUCGCGGGGGcGGCGC-----CCGcag -5'
15928 3' -68.2 NC_004065.1 + 94359 0.68 0.386044
Target:  5'- uGCGCgAGC-CCCCCgacgcgcguuacgGCCGCGGcgaGCuGUCg -3'
miRNA:   3'- -CGCGgUCGcGGGGG-------------CGGCGCC---CG-CAG- -5'
15928 3' -68.2 NC_004065.1 + 159913 0.68 0.357585
Target:  5'- gGCGCCGcCGCCgCCGCUGCcGGUGc- -3'
miRNA:   3'- -CGCGGUcGCGGgGGCGGCGcCCGCag -5'
15928 3' -68.2 NC_004065.1 + 184039 0.68 0.350528
Target:  5'- cCGCCacGGCGCCCagguCGCCGUuacacacGGCGUCc -3'
miRNA:   3'- cGCGG--UCGCGGGg---GCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 187367 0.69 0.336035
Target:  5'- cGCGUCAGCGUCCCgaucuuugccagcUGgCGCGcggcgcgguguGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCGGGG-------------GCgGCGC-----------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 58682 0.69 0.316748
Target:  5'- aCGCuagucaCAGCGCCgUCGCUcCGGGUGUCa -3'
miRNA:   3'- cGCG------GUCGCGGgGGCGGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 155193 0.7 0.297685
Target:  5'- uGCGCCGccuCGgUCCCGaCC-CGGGCGUCu -3'
miRNA:   3'- -CGCGGUc--GCgGGGGC-GGcGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 151360 0.71 0.251234
Target:  5'- gGCGCCgcGGCGCCggCCGCUGCGcuGGCGg- -3'
miRNA:   3'- -CGCGG--UCGCGGg-GGCGGCGC--CCGCag -5'
15928 3' -68.2 NC_004065.1 + 66726 0.71 0.235418
Target:  5'- -gGCUGGCGCCCgUGCCGuCGGaccccggcgGCGUCg -3'
miRNA:   3'- cgCGGUCGCGGGgGCGGC-GCC---------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 86904 0.72 0.206294
Target:  5'- gGCGCCGGUcucGCCCUCgGCgGCGcGcGCGUCg -3'
miRNA:   3'- -CGCGGUCG---CGGGGG-CGgCGC-C-CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 107529 0.73 0.176306
Target:  5'- uGCGCgCGGCGaCCgCCCaGCUGCGGGuCGUg -3'
miRNA:   3'- -CGCG-GUCGC-GG-GGG-CGGCGCCC-GCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.