miRNA display CGI


Results 61 - 80 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 184039 0.68 0.350528
Target:  5'- cCGCCacGGCGCCCagguCGCCGUuacacacGGCGUCc -3'
miRNA:   3'- cGCGG--UCGCGGGg---GCGGCGc------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 153286 0.68 0.371994
Target:  5'- cCGCCGGCGCcgcgcccguCCCCGCCGaGGaGUG-Ca -3'
miRNA:   3'- cGCGGUCGCG---------GGGGCGGCgCC-CGCaG- -5'
15928 3' -68.2 NC_004065.1 + 106439 0.74 0.160964
Target:  5'- cGCGCgGGCGCUCgUCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGG-GGCGGCg----CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 746 0.73 0.188653
Target:  5'- cGCGaCCAGCGUgCCgCGUCGCGGGU-UCg -3'
miRNA:   3'- -CGC-GGUCGCGgGG-GCGGCGCCCGcAG- -5'
15928 3' -68.2 NC_004065.1 + 77724 0.72 0.210922
Target:  5'- cCGCCGGCaccGCCgCCGCCGCaggacuGGGCGa- -3'
miRNA:   3'- cGCGGUCG---CGGgGGCGGCG------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 75871 0.71 0.235418
Target:  5'- cCGCCGcCGCCgCCGCCGCcaccgcccgGGGCGaUCg -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGCG---------CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 40482 0.7 0.291532
Target:  5'- cGCGCUGGgGUCCaggCCGCuCGCGGGCu-- -3'
miRNA:   3'- -CGCGGUCgCGGG---GGCG-GCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 198377 0.69 0.303939
Target:  5'- -gGUCGGCGUCaaCGCCGUGGGCcagGUCu -3'
miRNA:   3'- cgCGGUCGCGGggGCGGCGCCCG---CAG- -5'
15928 3' -68.2 NC_004065.1 + 188068 0.69 0.316748
Target:  5'- aGCGCCAGCGUcgagaaCCCgGCCGUGcacgacGCGUa -3'
miRNA:   3'- -CGCGGUCGCG------GGGgCGGCGCc-----CGCAg -5'
15928 3' -68.2 NC_004065.1 + 87682 0.69 0.336715
Target:  5'- cUGaCGGUGCUCUCGCCGCcGGCGUUc -3'
miRNA:   3'- cGCgGUCGCGGGGGCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 168818 0.66 0.483209
Target:  5'- uCGCCAuCaucCCCUCGCCGCGGGUc-- -3'
miRNA:   3'- cGCGGUcGc--GGGGGCGGCGCCCGcag -5'
15928 3' -68.2 NC_004065.1 + 170314 0.66 0.466303
Target:  5'- uCGCCGuGCGCCgCgGCCGCucGGCGcCc -3'
miRNA:   3'- cGCGGU-CGCGGgGgCGGCGc-CCGCaG- -5'
15928 3' -68.2 NC_004065.1 + 78347 0.67 0.409706
Target:  5'- gGCGCCGcGCGCUggcgguagagCUCGCUGUcguugaGGGCGUUg -3'
miRNA:   3'- -CGCGGU-CGCGG----------GGGCGGCG------CCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 184484 0.67 0.417529
Target:  5'- gGCGgCuGcCGCCgCCGCCGCGGcgccgggugGCGUa -3'
miRNA:   3'- -CGCgGuC-GCGGgGGCGGCGCC---------CGCAg -5'
15928 3' -68.2 NC_004065.1 + 102066 0.67 0.431036
Target:  5'- aGCGCCgaagagcaucuuguAGUGCaCgCCGaCGCGGGCGg- -3'
miRNA:   3'- -CGCGG--------------UCGCG-GgGGCgGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 163502 0.67 0.433446
Target:  5'- aGCGCaGGCGCUCCaCGCacaGCGauuccaGCGUCg -3'
miRNA:   3'- -CGCGgUCGCGGGG-GCGg--CGCc-----CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 549 0.67 0.441535
Target:  5'- uGUGCgAGCGCCCCCuGuUCGCGcaacggggcuGGCGg- -3'
miRNA:   3'- -CGCGgUCGCGGGGG-C-GGCGC----------CCGCag -5'
15928 3' -68.2 NC_004065.1 + 28944 0.67 0.449709
Target:  5'- -aGCCGcCGCCUCCGUCGCcggaggcgGGGCGc- -3'
miRNA:   3'- cgCGGUcGCGGGGGCGGCG--------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 205176 0.67 0.449709
Target:  5'- cCGCCGuCGCCgCCaacaucgggCGCCGCGuGCGUCu -3'
miRNA:   3'- cGCGGUcGCGG-GG---------GCGGCGCcCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 160859 0.66 0.457966
Target:  5'- uCGCCuuCGCCUCCGCCuCGuccaGCGUCg -3'
miRNA:   3'- cGCGGucGCGGGGGCGGcGCc---CGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.