miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 3' -68.2 NC_004065.1 + 75871 0.71 0.235418
Target:  5'- cCGCCGcCGCCgCCGCCGCcaccgcccgGGGCGaUCg -3'
miRNA:   3'- cGCGGUcGCGGgGGCGGCG---------CCCGC-AG- -5'
15928 3' -68.2 NC_004065.1 + 77724 0.72 0.210922
Target:  5'- cCGCCGGCaccGCCgCCGCCGCaggacuGGGCGa- -3'
miRNA:   3'- cGCGGUCG---CGGgGGCGGCG------CCCGCag -5'
15928 3' -68.2 NC_004065.1 + 11892 0.67 0.441535
Target:  5'- aGCuGuCUAGUGUCUUCGCCcggaaaGUGGGCGUCu -3'
miRNA:   3'- -CG-C-GGUCGCGGGGGCGG------CGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 103773 0.67 0.449709
Target:  5'- cGCGCUgGGCGgcucgaUCCCCGCa-CGGGCGUg -3'
miRNA:   3'- -CGCGG-UCGC------GGGGGCGgcGCCCGCAg -5'
15928 3' -68.2 NC_004065.1 + 114009 0.68 0.357585
Target:  5'- cCGUCGGCagagagcuGCCCCCGCgGCGcaCGUCg -3'
miRNA:   3'- cGCGGUCG--------CGGGGGCGgCGCccGCAG- -5'
15928 3' -68.2 NC_004065.1 + 128422 0.67 0.409706
Target:  5'- gGCGgCGGCGCCgCCaccgagucugagCGCgGCGGagGCGUCc -3'
miRNA:   3'- -CGCgGUCGCGG-GG------------GCGgCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 102429 0.67 0.409706
Target:  5'- -aGCCGGCGCCUCCccuCUGCGaccugaacGGCGUg -3'
miRNA:   3'- cgCGGUCGCGGGGGc--GGCGC--------CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 125625 0.7 0.278935
Target:  5'- cGCGCCugguagaAGUGCacgagCCGCCGCGuGGCGUg -3'
miRNA:   3'- -CGCGG-------UCGCGgg---GGCGGCGC-CCGCAg -5'
15928 3' -68.2 NC_004065.1 + 78660 0.67 0.409706
Target:  5'- cCGCCAGCGCagcggCCggCGCCGCGGcGCc-- -3'
miRNA:   3'- cGCGGUCGCGg----GG--GCGGCGCC-CGcag -5'
15928 3' -68.2 NC_004065.1 + 224521 0.67 0.417529
Target:  5'- aUGCCAgGCGCUggauCgUGCUGCGGGCGa- -3'
miRNA:   3'- cGCGGU-CGCGG----GgGCGGCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 201027 0.7 0.27367
Target:  5'- uGCGCgCGGCGCCUcgccaCCGCCGcCGGagacugauccGUGUCg -3'
miRNA:   3'- -CGCG-GUCGCGGG-----GGCGGC-GCC----------CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 109620 0.7 0.27367
Target:  5'- cGgGCCgcGGUGCCCaccaCCGUCGaGGGCGUCc -3'
miRNA:   3'- -CgCGG--UCGCGGG----GGCGGCgCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 109864 0.7 0.262257
Target:  5'- gGUGCCgggcGGUGCCaCCggcguCGCCGCGGccGCGUCg -3'
miRNA:   3'- -CGCGG----UCGCGG-GG-----GCGGCGCC--CGCAG- -5'
15928 3' -68.2 NC_004065.1 + 224780 0.67 0.441535
Target:  5'- uGCaaCAGCGCCaCCUGa-GCGGGCGg- -3'
miRNA:   3'- -CGcgGUCGCGG-GGGCggCGCCCGCag -5'
15928 3' -68.2 NC_004065.1 + 152921 0.67 0.433446
Target:  5'- uCGgCGGCGCUgCCGCCGCGG-Ca-- -3'
miRNA:   3'- cGCgGUCGCGGgGGCGGCGCCcGcag -5'
15928 3' -68.2 NC_004065.1 + 225929 0.67 0.425443
Target:  5'- cCGCUucccGuCGUCuCCCGCgGCGGGUGUUg -3'
miRNA:   3'- cGCGGu---C-GCGG-GGGCGgCGCCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 68236 0.67 0.425443
Target:  5'- cGCGUCGGCGgUgacgaggacggaCCgGCUGCuGGCGUCg -3'
miRNA:   3'- -CGCGGUCGCgG------------GGgCGGCGcCCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 124635 0.67 0.425443
Target:  5'- -gGUCAGCGCCUCC-UCGCcGGcCGUCa -3'
miRNA:   3'- cgCGGUCGCGGGGGcGGCGcCC-GCAG- -5'
15928 3' -68.2 NC_004065.1 + 130071 0.72 0.209989
Target:  5'- gGCGUuucgcagCAGCaGCCgCCGCCGCGgcgguccGGCGUCa -3'
miRNA:   3'- -CGCG-------GUCG-CGGgGGCGGCGC-------CCGCAG- -5'
15928 3' -68.2 NC_004065.1 + 168621 0.72 0.201754
Target:  5'- gGCuGCUGGCGCUggUGCCGCGGGCGg- -3'
miRNA:   3'- -CG-CGGUCGCGGggGCGGCGCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.