miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15928 5' -57.7 NC_004065.1 + 174124 0.66 0.933344
Target:  5'- cGGACUCCGugagagguGCGGCaucggccuGGACGCcgGAuCGAc -3'
miRNA:   3'- uCCUGAGGC--------CGCCG--------CCUGUGa-UU-GCU- -5'
15928 5' -57.7 NC_004065.1 + 63833 0.66 0.933344
Target:  5'- uGGcuCUCCGGCaGUGGAUGCUcaGACa- -3'
miRNA:   3'- uCCu-GAGGCCGcCGCCUGUGA--UUGcu -5'
15928 5' -57.7 NC_004065.1 + 68154 0.66 0.932862
Target:  5'- uGGACgcggugaUCgCGGCGGCGcGCGC-GACGGa -3'
miRNA:   3'- uCCUG-------AG-GCCGCCGCcUGUGaUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 30076 0.66 0.92843
Target:  5'- cGGGACcgCC-GUGGCGGagcgcGCGCUGAUGu -3'
miRNA:   3'- -UCCUGa-GGcCGCCGCC-----UGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 120105 0.66 0.92843
Target:  5'- cGGGACg-CGaCGGCGGcCGCggcgGACGAg -3'
miRNA:   3'- -UCCUGagGCcGCCGCCuGUGa---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 118251 0.66 0.92742
Target:  5'- cGGACgcguggagcucgCCGGCGGCcucGACGuacUUGACGAc -3'
miRNA:   3'- uCCUGa-----------GGCCGCCGc--CUGU---GAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 135944 0.66 0.926913
Target:  5'- gGGGAuggcCUCUGGCGaucuuuucucgacaGCGGAaaACUGACGGa -3'
miRNA:   3'- -UCCU----GAGGCCGC--------------CGCCUg-UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 110166 0.66 0.926913
Target:  5'- uGGACUCCcGCaccucgucgauGGUGGGCucgacgaagauccuGCUGGCGAg -3'
miRNA:   3'- uCCUGAGGcCG-----------CCGCCUG--------------UGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 75799 0.66 0.923297
Target:  5'- gGGGGag-CGGCGGCGaGGCAcCUGGCa- -3'
miRNA:   3'- -UCCUgagGCCGCCGC-CUGU-GAUUGcu -5'
15928 5' -57.7 NC_004065.1 + 148868 0.66 0.923297
Target:  5'- aGGaGGCggCGGCGGgGGGCGaggggGACGAa -3'
miRNA:   3'- -UC-CUGagGCCGCCgCCUGUga---UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 7361 0.66 0.923297
Target:  5'- aAGGACUaCUGuCGGacgugGGGCGCUGACGc -3'
miRNA:   3'- -UCCUGA-GGCcGCCg----CCUGUGAUUGCu -5'
15928 5' -57.7 NC_004065.1 + 131247 0.66 0.917945
Target:  5'- cGGucguCUCCguGGCGGCGGACGuuCUGcGCGc -3'
miRNA:   3'- uCCu---GAGG--CCGCCGCCUGU--GAU-UGCu -5'
15928 5' -57.7 NC_004065.1 + 59706 0.66 0.917945
Target:  5'- aAGGGCgCCGaGCGGCcGcGGCGCacGGCGAc -3'
miRNA:   3'- -UCCUGaGGC-CGCCG-C-CUGUGa-UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 155354 0.66 0.917945
Target:  5'- cGGACcCUGcGCuacGGCGGACGCgccGCGGu -3'
miRNA:   3'- uCCUGaGGC-CG---CCGCCUGUGau-UGCU- -5'
15928 5' -57.7 NC_004065.1 + 120458 0.66 0.917945
Target:  5'- cAGGAgaCaGGCGGCcaccucgaGGuCGCUGACGAc -3'
miRNA:   3'- -UCCUgaGgCCGCCG--------CCuGUGAUUGCU- -5'
15928 5' -57.7 NC_004065.1 + 176331 0.66 0.917945
Target:  5'- gAGGGCggUCgGGCGGCG-ACACgaucaucgGAUGAc -3'
miRNA:   3'- -UCCUG--AGgCCGCCGCcUGUGa-------UUGCU- -5'
15928 5' -57.7 NC_004065.1 + 181847 0.66 0.912376
Target:  5'- aAGGGCUUCcGCGGUaucGGACGCcu-CGAg -3'
miRNA:   3'- -UCCUGAGGcCGCCG---CCUGUGauuGCU- -5'
15928 5' -57.7 NC_004065.1 + 90982 0.66 0.912376
Target:  5'- cGGAaaacCUCUGGCGGaCGGACuGC-AGCGu -3'
miRNA:   3'- uCCU----GAGGCCGCC-GCCUG-UGaUUGCu -5'
15928 5' -57.7 NC_004065.1 + 34431 0.66 0.912376
Target:  5'- uGGACUCCacggaucgcacGGcCGGgGGACGCgaauccuGCGGc -3'
miRNA:   3'- uCCUGAGG-----------CC-GCCgCCUGUGau-----UGCU- -5'
15928 5' -57.7 NC_004065.1 + 97928 0.66 0.912376
Target:  5'- cAGGACccgcaguuccUCCGGCGGCaG-CGCgu-CGAa -3'
miRNA:   3'- -UCCUG----------AGGCCGCCGcCuGUGauuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.